RNA id: TU198788


Basic Information

Item Value
RNA id TU198788
length 1446
lncRNA type read_through
GC content 0.35
exon number 3
gene id G147198
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 29291450 ~ 29426726 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcatacctgccaacattgGGCTGTGAAAAAGAGTTTCATCCATTTTTAGTTCAGTTGACTCTTGACTCGAACGGAAACTTGAATGTTACGAGTGATGCACGGCACCTCAGGCGGGGTAGTTACATATCCTACAGTCTGGACATATTACAGAAACTGTGAAACACCCATTTGAGTCATATCACAATGAAATCAGGAGATTAGCGGGACAAATTACCAATCAGGGGCAGGGTAGGAGAAAAGGTTAAAAGCAAGTAGACTACTGCGTATATCGAgagtgttggcaggtatgaTTTTTATCCCACAAACATTAAAAGTATGATGCAAATGTGCCTGCTTATGCATGATCAACAATAAAGATCCCTGTTTTTTGTAGTTAACAATAAAAACTTAACAGTAGCAATCAACAGAAAACAGCGAGAGTAAAAATAGAGAATATGTGTTTAAGACACGACATGAAAAGGAATTTGATTTCATTGTAAGGCTTCTAGTTGAAAAAGTTTCCACCACATCCTATGTAAAAAAAGGTTATTTTGCCATTCAGGTTAAAGGATTATTAATATAGAGTTTACAATATGATTGAACAGTTGTtgagttagaaaaaaaaacaggtctgTGTATTGCTATGGTGACAGAATTTTCTGACAGCATCAGAAAATTGCCGTCTTTGTATTAAAAGACCTGTTGATCAATTTCACAATGAAAGCAGATTACAAATTCTGCAGCCTTTGGTAGTAGAGCATTCCTTTTCTGACCTTAAATGTAAAGTAATAAAAATGGGCTGTAAATTATTGAAGACATAATATATTAAATTATACTATAGGATTGATTTAACTTTAAAAACACCAAAGCTTATTTGATCTGACATTGTGCAGCTTATTTTTGGGTAAGTGCACTTGCAACTTCTTCAATTTTCATTCAAATGTGACGAGAAAAAAGTTCAAAGTCGTATGATGACTTTGTCATAACTATACTATTCTTGTGTATAACTCCAAGCATATATGTAGTAATTAAAagtgaaacatttaaaatattgcatGCACATTTTCTCAATTACTAAACATGTAAATGTGATTATAAAATGTGACAAATGGACAACATGAACTATCCATATTTGACTGGCATATTTACTGTAAAACTGATATAAAACACAACAGCTGTAGCTCCAACTTCttgctacttttactgaagttgtCTCGAACGCTGTTCCTTCACCATTTTCTTCATGTCATTGGCTGGTTTGAGATCAGCTACGGTGAGCAAATCTTCTGGGTCACCCTTTGGATCATGTTTGTTTCTGTAAAATGATGTTCAGTTACTAGAAAATACAAGGAAGCATGCCCAATTTAAACCTTGGGGCCTTCTTTTTACGATGGGTGTAGTTTCAGGCTCACTACCTAATCAGCCCAATTGTGACCTATCCGTACATGCAATCTCATACAGTTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641586.1 lncRNA upstream 56032 29210762 ~ 29235418 (+) True LOC120573012
TU198680 lncRNA upstream 73646 29208411 ~ 29217804 (+) False LOC120573012
TU198696 lncRNA upstream 117599 29173554 ~ 29173851 (+) True G147129
TU198581 lncRNA upstream 194850 29096270 ~ 29096600 (+) True G147042
TU198569 lncRNA upstream 225941 29047895 ~ 29065509 (+) True G147035
XR_005641555.1 lncRNA downstream 82456 29509182 ~ 29509606 (+) True LOC120572982
TU198914 lncRNA downstream 137855 29564581 ~ 29564977 (+) True G147296
TU198922 lncRNA downstream 146915 29573641 ~ 29576526 (+) True G147302
TU198924 lncRNA downstream 148917 29575643 ~ 29577819 (+) True G147304
TU198926 lncRNA downstream 158168 29584894 ~ 29610618 (+) True G147306
XM_039822380.1 mRNA upstream 30992 29254081 ~ 29260458 (+) True LOC120572873
XM_039822381.1 mRNA upstream 30992 29254081 ~ 29260458 (+) False LOC120572873
XM_039822396.1 mRNA upstream 54670 29174343 ~ 29236780 (+) False LOC120572882
XM_039822375.1 mRNA upstream 88926 29193810 ~ 29202524 (+) True LOC120572868
XM_039822376.1 mRNA upstream 88926 29193810 ~ 29202524 (+) False LOC120572868
XM_039822441.1 mRNA downstream 90126 29516852 ~ 29520259 (+) True LOC120572920
XM_039822442.1 mRNA downstream 90171 29516897 ~ 29520259 (+) False LOC120572920
XM_039821913.1 mRNA downstream 248587 29675313 ~ 29690845 (+) False clrn1
XM_039821914.1 mRNA downstream 264603 29691329 ~ 29696000 (+) True LOC120572592
XM_039822180.1 mRNA downstream 291126 29717852 ~ 29739188 (+) True LOC120572760
TU198568 other upstream 225941 29029482 ~ 29065509 (+) False G147035
TU198572 other upstream 225941 29029482 ~ 29065509 (+) False G147035
TU198574 other upstream 225941 29029482 ~ 29065509 (+) False G147035
TU198224 other upstream 639937 28638750 ~ 28651513 (+) False tec
TU198923 other downstream 146701 29573427 ~ 29618152 (+) True G147303
TU198920 other downstream 248587 29675313 ~ 29680473 (+) True clrn1
TU198992 other downstream 265100 29691826 ~ 29695750 (+) False LOC120572592
TU199012 other downstream 322040 29748766 ~ 29860892 (+) False G147348
TU199023 other downstream 323363 29750089 ~ 29797132 (+) True G147352

Expression Profile