RNA id: TU198923


Basic Information

Item Value
RNA id TU198923
length 705
RNA type TUCP
GC content 0.50
exon number 2
gene id G147303
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 29573427 ~ 29618152 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtctcgtgcagtctgtgtgtgtgtgtctgtgtgtgtctctaaggtctgtctgtgtgtctgtgtgtctctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtctgtgtgtctgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtcttgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtctgtgtgtgtgtgtgtgtgtgtttcttacgATGTATCCTGCGTACTCTTCGTTCTCTACGAAGGAGTCGTGCAGCCAGATGAACTCTTCGTGCTGTCGGACCACCGAGAACTCGTTCTGCTTGAAGTTCGGGAGCGTGCTCTGTGCAAACAGGACAGGAGTAGTACTCCAGtattactttatacttctactcctcaCACAGAATACTCAGGTTTCCACAGGCAGCCGAAATAACGGCAGATTCAATCCATTCCCCACGAGAGCAGCGATACGAGTGCCAGGATGTTCACAGCTCTCCCCGAGCGGTAGCCAATGAGAGAGCAGACTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198914 lncRNA upstream 8450 29564581 ~ 29564977 (+) True G147296
XR_005641555.1 lncRNA upstream 63821 29509182 ~ 29509606 (+) True LOC120572982
TU198788 lncRNA upstream 146701 29291450 ~ 29426726 (+) True G147198
XR_005641520.1 lncRNA upstream 151678 29414263 ~ 29421749 (+) False LOC120572956
XR_005641523.1 lncRNA upstream 210313 29358621 ~ 29363114 (+) False LOC120572959
TU198953 lncRNA downstream 4000 29622152 ~ 29622644 (+) True G147318
TU198919 lncRNA downstream 14372 29632524 ~ 29633659 (+) True G147300
TU198918 lncRNA downstream 15084 29633236 ~ 29633659 (+) False G147300
TU198979 lncRNA downstream 30078 29648230 ~ 29650940 (+) True G147329
TU198925 lncRNA downstream 58534 29676686 ~ 29680877 (+) True G147305
XM_039822441.1 mRNA upstream 53168 29516852 ~ 29520259 (+) True LOC120572920
XM_039822442.1 mRNA upstream 53168 29516897 ~ 29520259 (+) False LOC120572920
XM_039822379.1 mRNA upstream 165162 29385915 ~ 29408265 (+) True LOC120572872
XM_039822436.1 mRNA upstream 215987 29356226 ~ 29357440 (+) True LOC120572916
XM_039822383.1 mRNA upstream 230747 29337628 ~ 29342680 (+) True LOC120572875
XM_039821913.1 mRNA downstream 57161 29675313 ~ 29690845 (+) False clrn1
XM_039821914.1 mRNA downstream 73177 29691329 ~ 29696000 (+) True LOC120572592
XM_039822180.1 mRNA downstream 99700 29717852 ~ 29739188 (+) True LOC120572760
XM_039822403.1 mRNA downstream 205067 29823219 ~ 29825432 (+) True LOC120572888
XM_039822466.1 mRNA downstream 260717 29878869 ~ 29883395 (+) True LOC120572934
TU198769 other upstream 92940 29269414 ~ 29480487 (+) True G147192
TU198771 other upstream 151628 29414312 ~ 29421799 (+) True LOC120572956
TU198568 other upstream 507918 29029482 ~ 29065509 (+) False G147035
TU198572 other upstream 507918 29029482 ~ 29065509 (+) False G147035
TU198574 other upstream 507918 29029482 ~ 29065509 (+) False G147035
TU198920 other downstream 57161 29675313 ~ 29680473 (+) True clrn1
TU198992 other downstream 73674 29691826 ~ 29695750 (+) False LOC120572592
TU199012 other downstream 130614 29748766 ~ 29860892 (+) False G147348
TU199023 other downstream 131937 29750089 ~ 29797132 (+) True G147352
TU199068 other downstream 310675 29928827 ~ 29938473 (+) False G147371

Expression Profile