RNA id: XM_039822354.1


Basic Information

Item Value
RNA id XM_039822354.1
length 888
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC120572855
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 30619016 ~ 30625059 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCAGACATTAAAGCAGGAAATGTGTGGTTTTAGCAGCTCTGAGTCTAGCATTCAAAGTGCTCGGTGTCACATCACCAACAGGTACGATGGCACGAACATCTCTGCAATGGCTGATCTttctgacCTCACTGCTGAGCAGCACCACAAACCAAGtctctctgactgggAGTCCCAGCAGCTCTCAGACGTTTGAaggacagtctgtctctctgagctgtgaggaggacgactgctctgctggatggactctgaggaggaacacaAACAGAGAAACCAGGACTCAGTGTGGACCTGACTGGGGAAGACCTACTGGTTTCTCCTGTATCATCAGCTACATGGACCCAGTGGAGAGTGGAGTttactggtgtgagtccagagagggagcGGCCAGTAACAGCATCAACATCACTATCACTGgtggaccagtgatcctgcagagtcctgtcctccctgtgatggagggagaagacctcactctgacctgtaaaacaaagaagccctccaacctcccagctgatttctataaagatggctccttcatcaggactgagccttcaggtcacatgaccatccaccatgtttccaggtctgatgaaggCCTCTACAAGTGTTTCATCAGCAATGTTGGAGAGTctccacccagctgggtctctgtcacaggtgAGGAGGTTACCTTTGATTTCAGGAGTTCATTCATCCAGATATTCACCTGCCAGCTGATTCTCTCTACAGAGAAACCTACGACCAAAAGCCCTCCCTCGAGCTCGCTGCCGCCCCCTTCCTCAGGCTCAGCTCCGCCCCTTGCCTCAGACCCCCTCCACCTTGTTGTGTTCTGTCCCGACGGCATCTCTACTTTCATCATGTTgtctttaaattaaaacaacagG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199246 lncRNA upstream 89667 30528892 ~ 30529349 (+) False G147478
XR_005641613.1 lncRNA upstream 104713 30511952 ~ 30514303 (+) True LOC120573040
XR_005641515.1 lncRNA upstream 133093 30482416 ~ 30485923 (+) True LOC120572953
TU199222 lncRNA upstream 165194 30451636 ~ 30453822 (+) True G147462
TU199215 lncRNA upstream 173588 30440861 ~ 30445428 (+) False LOC120572833
TU199282 lncRNA downstream 111532 30734847 ~ 30768337 (+) True LOC120572899
TU199284 lncRNA downstream 111532 30734847 ~ 30735460 (+) False LOC120572899
TU199310 lncRNA downstream 219685 30843000 ~ 30844794 (+) True G147526
XR_005641621.1 lncRNA downstream 291405 30914720 ~ 30915488 (+) True LOC120573047
XR_005641531.1 lncRNA downstream 295143 30918458 ~ 30925702 (+) False LOC120572963
XM_039822312.1 mRNA upstream 173961 30425589 ~ 30445055 (+) False LOC120572833
XM_039822311.1 mRNA upstream 173961 30425610 ~ 30445055 (+) False LOC120572833
XM_039822310.1 mRNA upstream 173961 30425672 ~ 30445055 (+) False LOC120572833
XM_039822308.1 mRNA upstream 173962 30425649 ~ 30445054 (+) False LOC120572833
XM_039822309.1 mRNA upstream 173962 30426204 ~ 30445054 (+) True LOC120572833
XM_039822420.1 mRNA downstream 69976 30693291 ~ 30696500 (+) True LOC120572903
XM_039822264.1 mRNA downstream 77942 30701257 ~ 30708322 (+) True LOC120572809
XM_039822415.1 mRNA downstream 125843 30749158 ~ 30750507 (+) False LOC120572899
XM_039821923.1 mRNA downstream 127917 30751232 ~ 30754016 (+) True LOC120572602
XM_039822421.1 mRNA downstream 164301 30787616 ~ 30794921 (+) True LOC120572904
TU199247 other upstream 76507 30540941 ~ 30542509 (+) True G147478
TU199110 other upstream 575309 30035573 ~ 30043707 (+) False prpf4
TU199109 other upstream 575309 30035900 ~ 30043707 (+) False prpf4
TU199111 other upstream 606720 30010635 ~ 30012296 (+) False fer
TU199070 other upstream 616515 29948919 ~ 30002501 (+) False G147371
TU199299 other downstream 247469 30870784 ~ 30872888 (+) True G147518
unassigned_transcript_713 other downstream 370117 30993432 ~ 30993503 (+) True trnag-ucc_10
unassigned_transcript_714 other downstream 371224 30994539 ~ 30994609 (+) True trnas-aga_10
TU199831 other downstream 461295 31084610 ~ 31089077 (+) False LOC120572605
XR_005641510.1 other downstream 493175 31116490 ~ 31117987 (+) False LOC120572908

Expression Profile