RNA id: XM_039822385.1


Basic Information

Item Value
RNA id XM_039822385.1
length 836
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC120572877
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 30287289 ~ 30291890 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAACATTTGATGAAATAGCAAAGCCTCAAAACTAAAACTCTTGGAGAAAAGACAGCAACGGATCAAGACTCTCTCAGCTCTCATGGCTCCATTTCTGCTCCTGTTGCTCATTCTCTCTGAAGCAGCTCCTGacCTGATTGTGGTAACAGTTGATCCTGGAGATGATGTCATTCTGCCATGTCAGGCTGCTGATTCCTCCATCAGTGCTGTAGAGTGGAGCAGAGATGACCTGAAGCTACCAGAGTACGTCCTCTATAACATCGACGGTGACATGGAAACAGACGACCAGCATCCATCCTATAAGGACAGGGTGGAGCTGGTGGACAGACAGCTGAAGGACGGAGACGTGTCTTTAATTCTGAAGAATGTGAACATCAATGACACTGGAACATACGAGTGTCGAGTTGCATCAGCTGGCTCAACACGTAGGAAGAGAGGCAGTCTCGACATTGACTCTGAGCCAATCAGAACCATCCGTTTGCAGGTTACAAAGCCAGgtcaGAAGAGTGCACGCCCCAAGGATGGACACTCAATGAATGATGTCCCTGAGGATGGAAACTCCTCTCCTGTAGGCCTCCTCGTTGGACTGGCAGCATGTGTTGCAGGTGCAATGCTTCTTATAGTTGTTGGTGTGGCTTTTGTCCTGATATATGAAAGACATAAGCACAGGAGGTCAGGATGGCCTGCTGATGATGATTATAATTCACTTAATatcacaatacacaatacacaaaagacaaaataaaatgagatAAAACTCAAATGTTCTGTAATTATATTGGCATGTTATGAAGTTTATTCTCATGAATAATACGATAAACAGGACAAACAATGT

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641612.1 lncRNA upstream 15267 30270601 ~ 30272022 (+) True LOC120573039
XR_005641599.1 lncRNA upstream 39231 30244475 ~ 30248058 (+) True LOC120573025
TU199168 lncRNA upstream 93593 30190223 ~ 30193696 (+) False LOC120572774
XR_005641602.1 lncRNA upstream 108253 30177557 ~ 30179036 (+) True LOC120573028
TU199141 lncRNA upstream 169467 30074642 ~ 30117822 (+) True G147409
XR_005641625.1 lncRNA downstream 121097 30412987 ~ 30415794 (+) True LOC120573054
TU199215 lncRNA downstream 148971 30440861 ~ 30445428 (+) False LOC120572833
TU199222 lncRNA downstream 159746 30451636 ~ 30453822 (+) True G147462
XR_005641515.1 lncRNA downstream 190526 30482416 ~ 30485923 (+) True LOC120572953
XR_005641613.1 lncRNA downstream 220062 30511952 ~ 30514303 (+) True LOC120573040
XM_039822203.1 mRNA upstream 72884 30190193 ~ 30214405 (+) True LOC120572774
XM_039822204.1 mRNA upstream 72884 30190193 ~ 30214405 (+) False LOC120572774
XM_039822205.1 mRNA upstream 72884 30190193 ~ 30214405 (+) False LOC120572774
XM_039822207.1 mRNA upstream 72884 30190193 ~ 30214405 (+) False LOC120572774
XM_039822206.1 mRNA upstream 72884 30190193 ~ 30214405 (+) False LOC120572774
XM_039822312.1 mRNA downstream 133699 30425589 ~ 30445055 (+) False LOC120572833
XM_039822311.1 mRNA downstream 133720 30425610 ~ 30445055 (+) False LOC120572833
XM_039822308.1 mRNA downstream 133759 30425649 ~ 30445054 (+) False LOC120572833
XM_039822310.1 mRNA downstream 133782 30425672 ~ 30445055 (+) False LOC120572833
XM_039822309.1 mRNA downstream 134314 30426204 ~ 30445054 (+) True LOC120572833
TU199110 other upstream 243582 30035573 ~ 30043707 (+) False prpf4
TU199109 other upstream 243582 30035900 ~ 30043707 (+) False prpf4
TU199111 other upstream 274993 30010635 ~ 30012296 (+) False fer
TU199070 other upstream 284788 29948919 ~ 30002501 (+) False G147371
TU199068 other upstream 348816 29928827 ~ 29938473 (+) False G147371
TU199247 other downstream 249051 30540941 ~ 30542509 (+) True G147478
TU199299 other downstream 578894 30870784 ~ 30872888 (+) True G147518
unassigned_transcript_713 other downstream 701542 30993432 ~ 30993503 (+) True trnag-ucc_10
unassigned_transcript_714 other downstream 702649 30994539 ~ 30994609 (+) True trnas-aga_10
TU199831 other downstream 792720 31084610 ~ 31089077 (+) False LOC120572605

Expression Profile