RNA id: XM_039822205.1


Basic Information

Item Value
RNA id XM_039822205.1
length 2314
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC120572774
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 30190193 ~ 30214405 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcctcTCTGTGGTTGATTTAACAGGAAGTTCTCATCCTCGCTGCAGCCAGACGGTCCCTGAAGCTTCGGCCGCCAGACAGACACCATGAAGGCACCGCGTCTTTTCCTCTTATTGTTCAGCTTCTACCAGACGACTCTCCCAGCTCGAGTCTCTGTGACCATCTCTCCCAGCAGATCGCAGCATTTTGAATATGAGAAACTGTCGGTGGACTGTGGTGATTGGACGGCGTGGAGATACACCACCAACAGCTGGAATCTGAGCCAGTGTGAGTTGGGCTGGGGAGCCAAGTCTTCGTCTTCCTGTGAAATCGGCACGGCCAAGGCCACGGACAGCGGCGTGTACTGGTGTCAGTCCAGACACGGAGACAGCAGCAATGTCGTCAACATCACCGTCACCGgtggaccagTGACCCTGCAGAGTCCGGTCCTTCCTGTGCCGGAAGGAGAAGACGTCATGCTGAGGTGTATTAAAAGGAACTCGTCCGCCCTCCCAGCTGAGTTCTATAAAGATGGCGTCTCCATCGGGAGAGGGGCTGAAGGTAATTGGACTCGCCGTCGTTTCTCCAGGTCGGATGAAGGATTCTACAAATGTAAAGTCGGCAATGAAGAGTCTCCACCCAGCTGGTTGCTGATGAAAGATGACTCTGTGCCGGCCTCTCTCCTCTCGGTGTCTCCGGACGTCACTCAGCTGTTTGAGTACGACGGTCTGTCTCTGAGCTGCGGCAACAACAGCCGATCTCACGGCTGGAGGATCATCAGAGCCACCAAGCTGGACGGGAAGGAGGGGATGCTGGTGAACTCCAGCGAGAAATGGGGCGAAGCTTCGCCTTCTGGCTTCAGAATCCACGCCGCCAAGAAGACGGACAGCGGCGTGTACTGGTGCGAGTCTCCCGCCAGGCAGCGGAGCAACTCTCTCAGCATCTCTTTTTACGGTACTGATAAAATAATACTGCAGAGTCCTGGCCGccctgtgatggagggagatAACGTCACGCTGCACTGCAAAACAAACCAACCCTGGGACTCCTTGCctggtttctataaagatggctccttcatcaggactgagcGTGAtggtcacatgaccatccacaatgtttccaggtctgatgaaggCCTCTACAAGTGCAACATCAGCACAGGTGGAGAGTCTCCACCCAGCTGGCTGTTTGTCAGAGGTGATACATTTCTCAGCCCTCAGGCTCTTCCTAAGGATAACTCCACTGATGAAGatTCTCGGAGCGATATGGAGGAAACTTCCTCTGCTGGTTCCTCGCCTCCGTCTGTGCTGACGCTGATACGCCACCTGGTGGTCATCTGTCCATACTGCATCTCCACCGTCCTGCTGGTGTCCATATGTCGACAGAAGCCCAAAGGAAACAGCAACCTTCTCCGGAGCGTATGCAGCTGTGCAGGAAGGAAGCAGCGTGTTTCCATGGCGATGTCTCCACCCAGAGAGGACGATCAGGGAGCGGACCGAGCGTATGAAAATGTCATTCCTGATGTCACCACTGAGCATAATTtctaaactctctctctctcttatgttgtgtttttcttttacggTTGTTGTCTGTAATGCTGTCCTGTTGTCATAAATGGCCTGGCCCCAGAGTATTTGTCCAAAATTTAAACCCTGCGTGAGCACAACTGGTCATTGCGGTCTTCAAATCTACTGGTTTAAGAAATCCCAAGGTCAAGGTATCAATGGGGGGGTAatctgccccgagactctggagcaagttaccccctgatattaacactattacagatgtagctcttttttCAGGTCCAAACTCAAAAACCCATttgtttagaatggcttttaatatgtagtagtggtgtgacactttccctctcctcctcctgtttctatgtaaccttttctgattttactgttttctatgtttcaGTCTTTTTATTGTATGATATGTTGTTATATTCTTGGTTCctgatgtaaagcactttggatacctgctggttgctgaaaagtgctgtataaataaatgttaattgTTTGATTTTGTACACTGGACTCACTCAGCAAGACCtggactgtttgctgtcctgtcTCCTAAACGGTGGAACAAGTTCCCCTTATTAACATGAGGACGGCTGAAAGTCTACACATCTCTTCAGAGGGCGTCCTGGCTATGAAGATAattgttatatatgtatataaaataatgCACTTACatgtggctctttgtagtttggcttatttgaagTTAATGTACGTGTTCTTTGCGATTCCTGCTGGTCTGAGTTTGAGGCatcatggttgaatgcacttattggaAGTTGCTTTTGGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641602.1 lncRNA upstream 11157 30177557 ~ 30179036 (+) True LOC120573028
TU199141 lncRNA upstream 72371 30074642 ~ 30117822 (+) True G147409
TU199149 lncRNA upstream 82181 30105626 ~ 30108012 (+) True G147414
TU199131 lncRNA upstream 111268 30078499 ~ 30078925 (+) True G147402
TU199140 lncRNA upstream 114897 30073742 ~ 30075296 (+) True G147408
XR_005641599.1 lncRNA downstream 30070 30244475 ~ 30248058 (+) True LOC120573025
TU199180 lncRNA downstream 51968 30266373 ~ 30356296 (+) True G147436
XR_005641612.1 lncRNA downstream 56196 30270601 ~ 30272022 (+) True LOC120573039
XR_005641625.1 lncRNA downstream 198582 30412987 ~ 30415794 (+) True LOC120573054
TU199215 lncRNA downstream 226456 30440861 ~ 30445428 (+) False LOC120572833
XM_039822213.1 mRNA upstream 17528 30157980 ~ 30172665 (+) True LOC120572780
XM_039822214.1 mRNA upstream 17528 30157980 ~ 30172665 (+) False LOC120572780
XM_039822215.1 mRNA upstream 17528 30157980 ~ 30172665 (+) False LOC120572780
XM_039822216.1 mRNA upstream 17528 30157980 ~ 30172665 (+) False LOC120572780
XM_039822198.1 mRNA upstream 35653 30130332 ~ 30154540 (+) False LOC120572769
XM_039822385.1 mRNA downstream 72884 30287289 ~ 30291890 (+) True LOC120572877
XM_039822312.1 mRNA downstream 211184 30425589 ~ 30445055 (+) False LOC120572833
XM_039822311.1 mRNA downstream 211205 30425610 ~ 30445055 (+) False LOC120572833
XM_039822308.1 mRNA downstream 211244 30425649 ~ 30445054 (+) False LOC120572833
XM_039822310.1 mRNA downstream 211267 30425672 ~ 30445055 (+) False LOC120572833
TU199110 other upstream 146486 30035573 ~ 30043707 (+) False prpf4
TU199109 other upstream 146486 30035900 ~ 30043707 (+) False prpf4
TU199111 other upstream 177897 30010635 ~ 30012296 (+) False fer
TU199070 other upstream 187692 29948919 ~ 30002501 (+) False G147371
TU199068 other upstream 251720 29928827 ~ 29938473 (+) False G147371
TU199247 other downstream 326536 30540941 ~ 30542509 (+) True G147478
TU199299 other downstream 656379 30870784 ~ 30872888 (+) True G147518
unassigned_transcript_713 other downstream 779027 30993432 ~ 30993503 (+) True trnag-ucc_10
unassigned_transcript_714 other downstream 780134 30994539 ~ 30994609 (+) True trnas-aga_10
TU199831 other downstream 870205 31084610 ~ 31089077 (+) False LOC120572605

Expression Profile