RNA id: XR_005641602.1


Basic Information

Item Value
RNA id XR_005641602.1
length 807
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC120573028
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 30177557 ~ 30179036 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCACCCACTTTTAAACATTTGATTAAATAGCAAAGCCTCAAACTAAAACTCACGGACAAGAGACGGCAATGGATCAAGACTCTCTCAGCTCTCATGGCTCCATTTCTGCTCCTGTTGCTCATTCTGTCTGAAGCAGCTCCTGTGTTGTACAGTGGAGCAGACGTGACCTGGAGCTGCCAGAGTACGTCCTCTTTTACAGCGATGGACACTTGGATGCAACCCAGCATTCATCCTTTAAGGACAGGGTGGACCTGTTGGACAGAGATCTGAAGGACGGAAATGTGTCTTTAATTCTGAAGAATGTGAGCAGACACAACGCTGGAAAATACGAGTGTCAAGTTGCATCAGCTGGTTCATTCGAgtcaGGAGAGCGCACACTCCAAGGATGAAAACTCAATGAATGCTGTCCCTGAGGATGTAAACTCCTCTTCTGATAATTTGTATTGGCAGCAGGTGGACTGCTTCTTTGTAGCTGCTGCAGCGGATGGTGTCCTGACATATAAAAGACGTGAGGACAAGAGATCGGGACAACATGCTGCTGATGATGATAAAGTATTGGCTGTTCAGTTCATCTGACAACTCAcagaccagaggcctgtactacgaggcaagatttggcgttaacgaggtaacttcaggttcaactcTGGGATTTCTGTATCTtgacggtggatcacttgttaccaaGTTAAATCACCGTGGTAACCTATGCTGTATACctaacctggtcaggagcaggttatgttggagattagagaccaacaggtgttaaagcaccgcctactgaccaatcaacaCTCAGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199135 lncRNA upstream 55755 30061685 ~ 30121802 (+) True G147403
TU199141 lncRNA upstream 59735 30074642 ~ 30117822 (+) True G147409
TU199149 lncRNA upstream 69545 30105626 ~ 30108012 (+) True G147414
TU199131 lncRNA upstream 98632 30078499 ~ 30078925 (+) True G147402
TU199140 lncRNA upstream 102261 30073742 ~ 30075296 (+) True G147408
TU199168 lncRNA downstream 11187 30190223 ~ 30193696 (+) False LOC120572774
XR_005641599.1 lncRNA downstream 65439 30244475 ~ 30248058 (+) True LOC120573025
TU199180 lncRNA downstream 87337 30266373 ~ 30356296 (+) True G147436
XR_005641612.1 lncRNA downstream 91565 30270601 ~ 30272022 (+) True LOC120573039
XR_005641625.1 lncRNA downstream 233951 30412987 ~ 30415794 (+) True LOC120573054
XM_039822213.1 mRNA upstream 4892 30157980 ~ 30172665 (+) True LOC120572780
XM_039822214.1 mRNA upstream 4892 30157980 ~ 30172665 (+) False LOC120572780
XM_039822215.1 mRNA upstream 4892 30157980 ~ 30172665 (+) False LOC120572780
XM_039822216.1 mRNA upstream 4892 30157980 ~ 30172665 (+) False LOC120572780
XM_039822197.1 mRNA upstream 23017 30130332 ~ 30154540 (+) True LOC120572769
XM_039822203.1 mRNA downstream 11157 30190193 ~ 30214405 (+) True LOC120572774
XM_039822204.1 mRNA downstream 11157 30190193 ~ 30214405 (+) False LOC120572774
XM_039822205.1 mRNA downstream 11157 30190193 ~ 30214405 (+) False LOC120572774
XM_039822207.1 mRNA downstream 11157 30190193 ~ 30214405 (+) False LOC120572774
XM_039822206.1 mRNA downstream 11157 30190193 ~ 30214405 (+) False LOC120572774
TU199110 other upstream 133850 30035573 ~ 30043707 (+) False prpf4
TU199109 other upstream 133850 30035900 ~ 30043707 (+) False prpf4
TU199111 other upstream 165261 30010635 ~ 30012296 (+) False fer
TU199070 other upstream 175056 29948919 ~ 30002501 (+) False G147371
TU199068 other upstream 239084 29928827 ~ 29938473 (+) False G147371
TU199247 other downstream 361905 30540941 ~ 30542509 (+) True G147478
TU199299 other downstream 691748 30870784 ~ 30872888 (+) True G147518
unassigned_transcript_713 other downstream 814396 30993432 ~ 30993503 (+) True trnag-ucc_10
unassigned_transcript_714 other downstream 815503 30994539 ~ 30994609 (+) True trnas-aga_10
TU199831 other downstream 905574 31084610 ~ 31089077 (+) False LOC120572605

Expression Profile