LOC120572716 (LOC104944164,LOC103360935,LOC101478222)


Basic Information

Item Value
gene id LOC120572716
gene name LOC104944164,LOC103360935,LOC101478222
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 10942438 ~ 10949255 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039822093.1
CAACAACAAAACACGCGCTCATACTCTTACCAAGAACTCGCGCGGAGTTTAGATATTGTACACATATCTGTGGCGGGAGATGTCGAACAGCGGGAGATAGACAATATATCGTTGTTTTgatatttaaaataatgtaaaaataaaatacgaTAGCAGAACGAGTTGTGACAATAAACGGCTTTTgctggaagacaacacaaagatGGAAGATTTCGGAATATATGCGGTTTTCGGAGTAAACTGTCCGCCTCAAAGGCTGCTGAGTGCTGAAGGTTCGTGTAGGGTGTCTGTTGCAGTTCCCCCGAGTGTCCGCCAGGTGGTGCTGTTCAGCAGTGGGCCGTGGGGGGAGCGGATCTGCGTCAACGCGGAGCTCAACGATGCTGACCGGTTCCCCATCACTATTGGAAAACTGACTCCATATAACAAGTGCCTGTCATGGGAGCAGTGGGAAGAGGAGACCTGGACAGACAGCGTCACACTGAATGTCACTCTGGAAGGAGGAAACCTGGTAAAAGCAGATTGGTCAGAGACGGAACTCCTGTCTGTAAAGGAATACACACCAAAGGACACTGTGGCTCCCCTCGCAGCCCTGGAACTCAACGGCAAGAGGAAGAGAGCGCGAGTGTCTGAGGAAGACGGGGACGAGAATAAGATGACGAAGAGTGGGGAACAGGAGAACGTGTGTCCAAACGGCACCGTGGAGAAGACCACACCTGTGCGAAAGGCCACAGGTCAAACCAAGGGGGGCCAGAAGCTGTTCAGTAGTGGAGCAGATGCAGCAAAGATGAAGGGAACAGTTAATGGAGCAGGACTGGTGCAGGGGATTGTGGGAAGAACGCCTCCACAGAGTGCAGCCAGGACGAAGAGTAAGCAGGCCAAGACTCCCACACAGACCGCCCCATTGGTCAGCCCGTCAGGTCGCTGGGGTCAGACTCTGTGCCCCATCGATGCTCTGACAGCTATTCTGATTGGAGGCCAGGGATCCAGGATGCAGTTCTGCAAAGATCCCATGTGGAAGCTCTGCACAGAGGACATGTCCTGGGTTGCAGCGGAGACTCTGGCAGAGGGTCCAACACCCGAGGCCAGGATCGGCCACACAGCCGTCTACGACCCGGACTCCCAGCGGATCTTTGTGTTTGGAGGCTCTAAGAACAAGAAGTGGTTCAACGACGTTCACATCCTTGACACACAGAGCTGGAAGTGGACCATGGTGGAGgctCAAGGCAAGGTTCCTCCTCTGGCCTACCACAGCTGCAGTATGTTTCGGGGCGAGCTGTTTGTGCTGGGAGGAGTGTTTCCTTGTCCAAACCCAGAGCCAGACGGCTGCAGTGACTCACTGTATATCTTCGATCCCCACCTCTCCATCTGGTACCAGCCGATTGTAACTGGCGACAAGCCATCCCCCCGCTCAGGCCACTCTGCATGTGTGATGCAGCAGAGGAAGATCTATGTATTTGGTGGATGGGACACTCCTGTCTGCTACAATGACATGTACATGTTGGACCTCGGTCTGATGGAGTTTTCTGCTGTGAAAACAACTGGGAAAGCCCCCTCTCCGCGAAGCTGGCATGGCAGTGCTGTGCTCTCAGATACAAAGTTCTTGATCCACGGAGGTTACAACGGAAACAACGCTCTCAGTGACACCTTCATCTTTGATATAGACGCCAACAGCTGGACGGAGGTGACGCTCCCTCAGCTCTCTGTCCCCAGGGCGGGGCACTCCATCATCACCATGGAGACGGACGGCCACCACCGTTTCTCAGGGCAGGATGAAGACGTGGACGCGGGCTCCATCAGCAGACGCCTGCTGGTGTTCGGAGGCGGAGACAACGAGGGCAACTTCTACTCCGACCTGACGACTGTCGCCGTGGAGGATCTGCTCGCTGCTATTTAAAGAGAGCGAGTCAGAGGTGAATCCTCACTCCCTGACTGCTTGTGAAGCCATTTTAACACCCCCCACAGatcctttttattatttatattcctatagtttgtctttgtttcctttttggcTGTGTGagccctctctttctttctttctttctttcttttttttttattttatttttttaaaggttttaaaGATGTTGGAGTTGGAAAGTGTACAGTTGAGGCATTTTTTCTTGTTTCCATGTAGTGCACAACAGGAATATGAGAGCTACTTTTTTTAACGAACATCAAAGAGAAATGTCCTCCGTCTCCTTGTGGTTCCATATgaattagtcttgcattgccagatctatCTCCATAGCACTGTCAGTGCTGGAGTATGGGTCTGGCTGCACAGGTTAACATTCTAATATAGGGGGGAAAACACTCTTgacttgtttatttctttaaaccagtcgcCTCAGGCGGTGCTAATCACCAGATACAGCGACAGcgcccttgcaaaatagatagcggaaggggaggagatgaatcaaatgttttatgtacATAGTTCAAAGCTTTTCAACTTGTTCCTCAGGtcaaatgtatatttttgtttctGATATATTATTTTCTTTCACTAATGAATAAGTGGAGCTTTTAGAAGCCTCGATATGCGGAATATGTTTCCTCTGGATAGCTGCACGTGCATTAACTGTATGTTAGGCTCAAAAACATGGTAATGTCATCATTTCCAAGATCTCACTTCATGTTACTGTGCATTGGCACTCGGCTTCTTTCTTTAcctaataataaacatttgatTTTCTACACTGTA

Function

NR:

description
PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039822093.1 True 2710 mRNA 0.49 13 10942438 10949255

Neighbor

gene id symbol gene type direction distance location
paip2b paip2b coding upstream 5992 10925381 ~ 10936446 (+)
cct7 cct7,LOC102781788 coding upstream 37955 10898617 ~ 10904483 (+)
LOC120573699 NA coding upstream 48022 10890307 ~ 10894416 (+)
nagk nagk coding upstream 52238 10886699 ~ 10890200 (+)
LOC120572135 m1ap,LOC107374457 coding upstream 80263 10822350 ~ 10862175 (+)
mark2b mark2 coding downstream 5276 10954531 ~ 11012906 (+)
trnal-aag_7 NA coding downstream 91190 11040445 ~ 11040526 (+)
naa40 naa40 coding downstream 92833 11042088 ~ 11053630 (+)
b3gat3 b3gat3 coding downstream 104793 11054048 ~ 11060385 (+)
sb:cb1058 NA coding downstream 114435 11063690 ~ 11068843 (+)
LOC120573686 NA non-coding upstream 252402 10689711 ~ 10690036 (+)
G142450 syt4,LOC104968104,LOC102777880 non-coding upstream 266065 10644623 ~ 10676373 (+)
G142440 NA non-coding upstream 348643 10593062 ~ 10593795 (+)
G142439 NA non-coding upstream 350825 10590998 ~ 10591613 (+)
G142431 LOC103364796,LOC104955570 non-coding upstream 379617 10551222 ~ 10562821 (+)
G142540 NA non-coding downstream 63044 11012299 ~ 11068760 (+)
LOC120572485 rcor2 non-coding downstream 66044 11015299 ~ 11028489 (+)
G142545 NA non-coding downstream 71012 11020267 ~ 11022811 (+)
LOC120572489 NA non-coding downstream 120161 11069416 ~ 11075604 (+)
LOC120573720 NA non-coding downstream 122188 11071443 ~ 11071506 (+)
LOC120573689 NA other upstream 237113 10698284 ~ 10705325 (+)
tmem88b tmem88,LOC104964151,LOC103375639,LOC102237254 other upstream 418690 10514237 ~ 10523748 (+)
LOC120572381 NA other upstream 2193538 8746620 ~ 8748900 (+)
LOC120572401 NA other upstream 2326247 8614290 ~ 8616191 (+)
LOC120572397 NA other upstream 2445892 8452933 ~ 8496546 (+)
zgc:101765 LOC104948199,LOC103360918 other downstream 218151 11167406 ~ 11177041 (+)
LOC120573186 LOC108242886 other downstream 255387 11204642 ~ 11308298 (+)
trnai-aau_24 NA other downstream 509102 11458357 ~ 11458430 (+)
trnai-aau_25 NA other downstream 509911 11459166 ~ 11459239 (+)
G142598 LOC104947722,LOC102192171 other downstream 512054 11461309 ~ 11463411 (+)

Expression


Co-expression Network