sb:cb1058


Basic Information

Item Value
gene id sb:cb1058
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 11063690 ~ 11068843 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039821827.1
TAAGGGGAGTATCCTGAGCTCAGTCattcactcagacacacacaaacacacaggagaTATTGCGCACCGgtgctcacaaacacacacacacacaagacagaggAGACAAGAGCAAGATATCAGAGGTGACCAAAAAAAAGGAGTTGgtgaaacacaaaaaaaaaaagggcgaAAGAAAAACAAGATACTGAAAGAGAAAACATGACAATTGGCAAGAACTCCAGGAAAAGCTCTGTGCGGAGCTCCATCCGGGCCCCAAAGTTTCTGGACAAATCCAGTGGCTTCTACGGTCGCCTTGATGAGCCTGAGGCTgctggagaaggagagaaggtgAGGGGAAAAGAAGTGGAGGAGACATTCAACTGGACAGAAGACAGCAACAGAGAGGGGGGAGTCGCAAGCAGCCCAAGTGAGGTGCGCATTTCTGGGGCAGATGAGAAGGAAGAAGTCGAGGCGTTTGATCTCAATGAAGGGATGATGGAAGACGACGGGGAGACTCTCCTCCAGAGGAAACCCAGCCGCCGCAGCAGCCGCTGGAGAAGAAGCTCCAGGAGGAAGCAGAAGGAGGGGAGAGCCGAGGAGGACACAGCCCGGGATGAGAGGCCCAGCCTGGGCACAGAGAGTCCCGTTGACCCAAACGTCCTGGAGGACACCAAGGTAATGATTGAAGTGAAtaagatggaggaagaggatgggAAGGCAGGAAAGGGGAAGGAGCCCACGCTTGTTCACTTCCCGGTTCGGGAGGATGCGGACGACCAGGTCCTGATCAGAGAcaggaagagggaggaagaggaggagaggaagatgaagaggGAGCAAGAGGAGGGGAAGAAGGTGGTGAAGAGGAACACTGGGAAGAATTATCGCAAGGCCTTGGACCGAGCCTTTCGTCGTGGCTGGGAGGCCTTCATCACCAACATATACAGCGTTACGCTCACACCTGTGACATCATCCTCACCGCCATCTTCTTCACCTTTGCCAAAGAAGAAACCGCAATCCAACTTGGTGTTAGCTGAGTTTCTGTAGAACTGGAGAGCGACATGGACGAAGAAATCAAATTTAGTTCAAATCATGATTTTATACGTTTATAATTACATGATGTGTTTGAGTCATGCAGTAGGCCTCCGAAACATTCATTATTTATCTACGTTAATGAATCTTAATCCCTCCTCGTAAAGTTTACTGCCTTGTCTCATCTTGATGCACATATGTTTGCACAGGGATTCATTTTTACTTCACGAGCTGAGGGAGCCACGCTGCTGATTCTACAGTGAAGCACTATGGGACTATAGCTTATATTGGAAAAACCCAGTCTCTATGTGACTGATTTCAGCTGCTTCTGGTTCCCTTCAACTGTGATGCTAATTTGGGATTATGTCTTAACATTTTAGCTCCTACATCCGGTCCACTATTAGGAGcttgaaacagaaataatcTTTCTATCCTTTTGTTTAGCACTATGAAACTACTAAAGTGTTGATGTGCAACCAATAGGAATGTTTCATTGTCAAACATGTTGCGATGATTTATTAGTGGACTTTGGTTCTGGAGATATTCCTACTTGTATGTTAGTCAGTGCCATTTATTGCTGTTTGACAGCTAATCAGTTGTTTTTTAATGATAGGAGGACAaacacccaccacacacacacacacacacacacacacacacacacacacacacacacaacaacacccaccacacacacacacacacacacacacagctaatttGTATTTTGACATTGTGATAGTGattaacacacacatttgtatgtTAATATTTGTGGAGAAAATTCaattttaacacatttaaacaggGGGTTTCCCATCTGTGTGTGCACAGAAATACAGAGTTTGACTTCCTCACTGTATGTTCTGATAAAGGTGATTTAACCTGAAGGGACAGGGCAGGAgagtgtatgcatgtgtgtgcaactgagagagaaagagatatatTTATAGCCTGGTTATAAAACAGCATGTCTTTTAATCGTTACCAATGTAGCTGCACATCACGTTTCTCTTAGTCTAAAACACCACTCACTGgcactttaaatgtaaaattggACTATAAAGTTAGTATCAACGTTCAACTGGGGACAGGAAGACGTGATAGAAGGGATTCAGAAGGTTTAGAAGGTTTAAACAGTGTATTAATGATTGGTTGACTTGTTagaatgaaaaatgtaatgtttacaACAGACCTGTAATTTCCTGTCATCCACTATGTATATGGTTTGGATATTACATCCAGTGTATTCTTGCAGACTGAATAGGTGGGAAAACTTGTATATAATGATTGTCTAAAGAAtgtgttaatttaaaaaaagatctttTTGTATCCTAATCAAAGCTTCTGAAGTCTTGAACCATAACAAGAAGCACTTTTCCGAGTAAATAAAGACTTAATTTATTTGTAatggttgtattttcatgttTCAGGATAAAGACAGAATAGATCTGTCTTGATTTGAATTACCTAATGTCATTGTTGCCATGATATTATGAGCAACGTGAAAAACTAACCAAATAAATGATTAAGATAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106578097 isoform X1

GO:

id name namespace
GO:0044421 obsolete extracellular region part cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039821827.1 True 2552 mRNA 0.43 3 11063690 11068843

Neighbor

gene id symbol gene type direction distance location
b3gat3 b3gat3 coding upstream 3305 11054048 ~ 11060385 (+)
naa40 naa40 coding upstream 10060 11042088 ~ 11053630 (+)
trnal-aag_7 NA coding upstream 23164 11040445 ~ 11040526 (+)
mark2b mark2 coding upstream 50784 10954531 ~ 11012906 (+)
LOC120572716 LOC104944164,LOC103360935,LOC101478222 coding upstream 114435 10942438 ~ 10949255 (+)
batf2 NA coding downstream 14138 11082981 ~ 11092180 (+)
ppp2r5b ppp2r5b coding downstream 33259 11102102 ~ 11140697 (+)
LOC120573182 LOC103384160,LOC100707302,LOC104948196,LOC104918736 coding downstream 73995 11142838 ~ 11148199 (+)
LOC120573144 LOC104948199,LOC103360918 coding downstream 102176 11171019 ~ 11177041 (+)
ppp1r14bb ppp1r14b coding downstream 328041 11396884 ~ 11422251 (+)
LOC120572485 rcor2 non-coding upstream 35201 11015299 ~ 11028489 (+)
G142545 NA non-coding upstream 40879 11020267 ~ 11022811 (+)
LOC120573686 NA non-coding upstream 373654 10689711 ~ 10690036 (+)
G142450 syt4,LOC104968104,LOC102777880 non-coding upstream 387317 10644623 ~ 10676373 (+)
G142440 NA non-coding upstream 469895 10593062 ~ 10593795 (+)
LOC120572489 NA non-coding downstream 573 11069416 ~ 11075604 (+)
LOC120573720 NA non-coding downstream 2600 11071443 ~ 11071506 (+)
LOC120573722 NA non-coding downstream 2827 11071670 ~ 11071739 (+)
LOC120573721 NA non-coding downstream 3113 11071956 ~ 11072025 (+)
LOC120573729 NA non-coding downstream 3396 11072239 ~ 11072365 (+)
LOC120573689 NA other upstream 358365 10698284 ~ 10705325 (+)
tmem88b tmem88,LOC104964151,LOC103375639,LOC102237254 other upstream 539942 10514237 ~ 10523748 (+)
LOC120572381 NA other upstream 2314790 8746620 ~ 8748900 (+)
LOC120572401 NA other upstream 2447499 8614290 ~ 8616191 (+)
LOC120572397 NA other upstream 2567144 8452933 ~ 8496546 (+)
zgc:101765 LOC104948199,LOC103360918 other downstream 98563 11167406 ~ 11177041 (+)
LOC120573186 LOC108242886 other downstream 135799 11204642 ~ 11308298 (+)
trnai-aau_24 NA other downstream 389514 11458357 ~ 11458430 (+)
trnai-aau_25 NA other downstream 390323 11459166 ~ 11459239 (+)
G142598 LOC104947722,LOC102192171 other downstream 392466 11461309 ~ 11463411 (+)

Expression


Co-expression Network