LOC120573182 (LOC103384160,LOC100707302,LOC104948196,LOC104918736)


Basic Information

Item Value
gene id LOC120573182
gene name LOC103384160,LOC100707302,LOC104948196,LOC104918736
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 11142838 ~ 11148199 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039822718.1
tttatttttttattgagctGTTATTGACTGATTTAGCATTTTAAGCAGAGCCATAATGAATCTGCACCTGGACCAATTTTCTAGGTTTTTCTGAATGCTTTTAAGTTTGAGTTTGATTGCCTTGCTCTGATGCTATTTAGGCTGCAGTCACACCTAATCTGCCACTGCTTCTTTCTACAAAAGAGCTTGCAGCTTTGCATTTAATTCCATTTGCAGATGTTGCATCCAACATCCAGGTTATAACCTCCAACACGTTTGTCACTCAAACCAAATTTGTCCAAGAAAGTTCATTGTTGAGCATGGAAACAGTAGTTTGACATCAAATGACAACTGAgaaaactccatctgctgatggGATGAAGACTGTGAGATACaattgaaagctccagaaaaagCTAAAAATTGGAACCTGAGTCAGCATTATCACACATGctagtggttcccaaccttttggCTTGTGACCCCCAACAAGCAAAACCCCTTGGCCTTCGTGTGGACATGAGTTGCGAGCAGTTTAACCAAAGagtgttttaaaaaacaataagtGTTCGTTCTAATTGGGTGCTCAACTTCAAGATACAAATcagtaaaaatacaaaacagcaaaaaatgtgagaaaaaataaaatactttttgtGTAAATAAATTTCTTTTCCCTGTCCTTTTAATTAACTGATTCATATTCTGATTCATCTCAGGACCCCTTACGGGACCCCAACCCCCAACTTGGCCTGGGAACCATTGACATTGACAGCCTCTCTTCTCTTAAGTACCACAATGCTGTATAGTTTTTTCCTTTCAGGCAGAATTTTCTGCACAATACTGGAGCATAAAGCGCACAAACTTGATGGGCCGTGCTCCGTAGCAGCCACAGAAAAAGCACTGATGGATTAGCTGTAATAGCAGCCTCATGCCAGTAAACGCCTCAAAACCTGCACCTGCAAACCCCACCGGGATGGCACTCTgggcagacaaaaaaaaaaatcctcccatttgtTTGGATTTCAAACATTGTTTTGATtcaggcaaaaaaaacacaactgaaaAGAGACTAAATTTGAGCTTGCTCGTAACACTCAGCTTACTTTATGATATTTGTTTTGGCTAGCTTAATTAACAGACCCTCCTGATTGTTATTGTCAATCGGTCAGCTGACTCGATGAAAACGGAACCCCAGCTCCCACTGTTCTAGAATTCTCTCTTATATTTGATCCATAGTAATATTTTCTCTTTCTAGAACTGCTCCAGAACAGGAAGCGAGAGAAGAGAGAGTGTTCGTAGAGAGATTGGGCATCGCCTCGCAGACAGCCATTAAACGCTGGTTTCATTCACTGTCACATTTAAATCCATGGGATGGTGTGAACGGATTGGATGAAAGCAGCCagtaaagattaaaaaaaaaagaggaggagaaagacagaggaaagaaaagacgTAGAGTTAGACATGATAGAATGGCAATAAGTCAGAGAAACAGTAACAGAATGAGAATATATAATGTTACCGAAACCTACAACTGCATTACGTAGCAATTTCACTGAATTTCTAGATTTGCACTGTCTGCCCATGgtctgtgtttgttgtgttgaaGAAAAACCTTAGAGAAGATGATTAAGATgatgcagaagaagaagatgtatATTTTGGGGTCCAACACAgcggtgtgtgtggggggggggttgaatGTAGAGAGGCTTACTACTGTACGTAACATTACAGGGGGGTGtagaatggagaaaaaaaacgatgTGCATAAAAATGAAACTTCACTTTGAGAAAACACTCTGGGAGTCTGTGCTGGTTTTTTTGTGTCACATCTTTTGTCTCTTCAGTAATATTAATTCCACTTCCTTTTATTGATACTTTGATCAACAGGCACAGTGTGCGTTACTTAAAGCTGCACCAATTTATATTCCTGTATAGACAGTAATGTGACCAGTCGGTTGTGTAGTTACGAACTTACTTGGCATTGTCTACGCGTTTAGcttattgtgtttgttttggccCACATCTGCATTTCCTGTCTCAGGCAGGCAGGTTTTTTGTTAGCGTAAAAGCTCTCAGAAATCCACAGTACACTACCTGCCTACATGTAGCATTAAACAGCATGTAAAGTTAGCACCTGGCTAGTGGAACAGTTAAatagccagatatttccctcaggagttggtggagaccaaagcaGAGCTAAAGACGAGTAAGTATTGCATTTATAATGGTTACATTCATCTGGCAACAAAACACAACTTCAGTTGAATGCTAATGTTTCTTTGTGTCTGCTAAATGTGTAAATTAATCAACTGTTAACTAATTCATAGCCATACCAACTTTGTAAGGTGATatgtcaatgtttttgttttgttttttttacatttttgctgaCCATTTTCAAGTGCAGGCTGCACAGTTTGGATGTACCAGAGTCAACCATTGATTTCTATCCATTTCCATATGGTGTCAGAATCAATTAGACACTTGAAACTTGCTTGAGTTTCTTAGTCCAttgcaaatcaaatcaaagaaatctgcaaaaagaaaatgcatCAGAGTTACCTAATATTCCATTGCATTAGGATGGAACAATGAATGGAAACCAATGGCTGCCCGGAACAGTAGCAAAAATACAGCCACAAATCTAAAGCAGCATGGTTTGCAAAATGGTTAGCTGTGATGTAAGGTGTAGGTACGTTTAGTAAATGGGCTAACACATGCAAAACACTGGTATGGTGTGGATCTAACAAAAATGTCCAATCCCTTAACTTTGAAATTACTCAGATTTTAAAACGTTCAGTCCTTTGTATTCATGTTACCAATCCTTTGTCGCAGTAAGTGTGGAGTTGAGTACTGCCAATCCTCCTATCACTGAGAGTAGACCAAAGTTGGATAAACgagtgcacacacactcacacagagagataCAGGCTGAGGTTAAGAAAACATGGGCAAGCATCAGTATTTTCCAGGGAGTCTCCATTATTTCTGGCTTGGGGTCTCTAATGGTATTTCATTGTAATTGCTATGATGTCAGAGTGTCCGTCCGCCCTAATGGCCTTCTAAAAACAACAAGGACAGATTGGTTCCATTCACTGGTTGTTGTCTGGGCAGAGAGACACCGGAGTCCAGAAGCTCAAATCTCTGCTGGATCTTCAGCTGAAAAGCATGCATCTTCATCCCCTGTCCTtcgttttcctcctcctcctggttGCCGGGGCAGCCAAGGTGTGCGTTGCCGTGACAACCGCACTGCATGGTTTCCGAGGCTGCGCGGTGCGAGAATTCTCTTTTGTGGCCCAGAAGCCTGGCTGCAAGGGACTGCACATCACCACAGAGGCCTGCTGGGGGCGTTGTCAAACCTGGGAGAAACCTGTGCCAGATCCCCCCTACATCCAGCGACACCACCGCGTGTGTACGTACAGTCGTACCCGCCACATGACCGCCCGCCTGCCGGGCTGCCAGCCCAACGTCTCCCCTCTCTACCACTACCCCATGGCTCTGCAATGCCACTGTGCTGTCTGCtccacacaggacacagagtGTGAGACCTTCTAATGGGCAGGACACGCTTTCAGCAAACAATGTTACTAACAGTATTATTGATATGAATGACTCTGAATAAAATGATGAAATTAA
>XM_039822719.1
TATTGGCTGCAGTAGCCATAAATAACACTAGAGGGAGTTGTGAGTCATGCTGAATGACTCACAACTCTCTTTAAAGTACTGCTCTTAAAGTCAGTCTTCTGTCAGCCTTTGAGGATCATCTTCCCCTATAGATTTAAATGACTGGCAATATGACCTTCAGCAATTCATTAtccattttacattaaaaaaacacaaaagaactgcttcttttattttttggcaAACTGTCTCCAACCCAGGTACAGAAGGTCACGTGTAGCTGTGGAATAATGAATATAAACCCTTGAATAATAGTATTCCCTCCATTAAAGttacttttaaatttttttctttctctattcACCATTCCCAGCATGCATCTTCATCCCCTGTCCTtcgttttcctcctcctcctggttGCCGGGGCAGCCAAGGTGTGCGTTGCCGTGACAACCGCACTGCATGGTTTCCGAGGCTGCGCGGTGCGAGAATTCTCTTTTGTGGCCCAGAAGCCTGGCTGCAAGGGACTGCACATCACCACAGAGGCCTGCTGGGGGCGTTGTCAAACCTGGGAGAAACCTGTGCCAGATCCCCCCTACATCCAGCGACACCACCGCGTGTGTACGTACAGTCGTACCCGCCACATGACCGCCCGCCTGCCGGGCTGCCAGCCCAACGTCTCCCCTCTCTACCACTACCCCATGGCTCTGCAATGCCACTGTGCTGTCTGCtccacacaggacacagagtGTGAGACCTTCTAATGGGCAGGACACGCTTTCAGCAAACAATGTTACTAACAGTATTATTGATATGAATGACTCTGAATAAAATGATGAAATTAA

Function

NR:

description
PREDICTED: glycoprotein hormone beta-5-like isoform X1

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039822718.1 True 3630 mRNA 0.42 3 11142838 11148199
XM_039822719.1 False 824 mRNA 0.47 2 11146639 11148199

Neighbor

gene id symbol gene type direction distance location
ppp2r5b ppp2r5b coding upstream 2141 11102102 ~ 11140697 (+)
batf2 NA coding upstream 50658 11082981 ~ 11092180 (+)
sb:cb1058 NA coding upstream 73995 11063690 ~ 11068843 (+)
b3gat3 b3gat3 coding upstream 82453 11054048 ~ 11060385 (+)
naa40 naa40 coding upstream 89208 11042088 ~ 11053630 (+)
LOC120573144 LOC104948199,LOC103360918 coding downstream 22820 11171019 ~ 11177041 (+)
ppp1r14bb ppp1r14b coding downstream 248685 11396884 ~ 11422251 (+)
brms1 brms1,LOC106929285,LOC101484341 coding downstream 275189 11423388 ~ 11433866 (+)
trnas-gcu_5 NA coding downstream 298334 11446533 ~ 11446614 (+)
slc3a2a NA coding downstream 340632 11488831 ~ 11495230 (+)
LOC120572489 NA non-coding upstream 67234 11069416 ~ 11075604 (+)
LOC120573727 NA non-coding upstream 67481 11075284 ~ 11075357 (+)
LOC120573728 NA non-coding upstream 67687 11075079 ~ 11075151 (+)
LOC120573726 NA non-coding upstream 68488 11074277 ~ 11074350 (+)
LOC120573723 NA non-coding upstream 69784 11072981 ~ 11073054 (+)
G142571 NA non-coding downstream 184169 11332368 ~ 11335346 (+)
G142577 NA non-coding downstream 190120 11338319 ~ 11338693 (+)
G142579 plcb3 non-coding downstream 198583 11346782 ~ 11347979 (+)
G142585 NA non-coding downstream 257474 11405673 ~ 11475004 (+)
G142586 NA non-coding downstream 260429 11408628 ~ 11437616 (+)
LOC120573689 NA other upstream 437513 10698284 ~ 10705325 (+)
tmem88b tmem88,LOC104964151,LOC103375639,LOC102237254 other upstream 619090 10514237 ~ 10523748 (+)
LOC120572381 NA other upstream 2393938 8746620 ~ 8748900 (+)
LOC120572401 NA other upstream 2526647 8614290 ~ 8616191 (+)
LOC120572397 NA other upstream 2646292 8452933 ~ 8496546 (+)
zgc:101765 LOC104948199,LOC103360918 other downstream 19207 11167406 ~ 11177041 (+)
LOC120573186 LOC108242886 other downstream 56443 11204642 ~ 11308298 (+)
trnai-aau_24 NA other downstream 310158 11458357 ~ 11458430 (+)
trnai-aau_25 NA other downstream 310967 11459166 ~ 11459239 (+)
G142598 LOC104947722,LOC102192171 other downstream 313110 11461309 ~ 11463411 (+)

Expression


Co-expression Network