LOC120572489


Basic Information

Item Value
gene id LOC120572489
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 11069416 ~ 11075604 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU192285
CTGTTTCCTCGTTCACTTCCTTCTCTGCTCTGTTCGAGGTGGCGTAAGAGCCAGAAACAACTTACTGCAAAGgtGTGAAGACTGGTGAACACCACATAAGGTGTACCTATGCCAATCAAAGATGACTGACAAGAATAAAGGACTTTAGCAGGTTGGTCTACCCTGCCCTCTCACTAATCTCAAAGCAGCTGCAAAGTGCAGAAGTGGGGGTTTGAACAAGAAGTTGGGGAAAGGATGCCCCATGGATATCTCAACATAGCCATGAGTGGATTCTTGAAGAGGAAGGCATCCATTGAAGCCTCATGTGACTGCATCAACAGCATGCTGAGGCCTTCTCATCAAAGGTACCTACTGGGTTATGGAAGTTGCTCACTTTTCTCCAACAAAGGAGTTTGCCCAGGTACCTAGCTTTGGAAGATGCTGCCATCTTCTCCACAACAAAGGGCTGCCTTTGGATGGAACTACCTAGAAACAAGCTGACTAGgTCCTAATTTGAATGTGTGAACTGAGGACATGGTCATTGCAAAAACAAAGCTCCAACAATTGAGGTTTGATGCTTTCGGACTGTGGGACAGCGCACACACCTGGGACTGCAGCAGGTGTGGCAGCATGAAATCTCTGGCTTGATCTTGTTGGTTTGGTGATGTGTCAGACTTGAGTGCGAGAACCAGACACCTGGGAGTGCTGCAGGATGAAGTCATCACATGGCCTTGATCTTATGCTCACTGTGATATGTGTTGAATTCATCTGGATCTGCTGCATTGGGATCTATGAACTTGGGTGCCTTATCCATCAGCAGTGTTGAAATGCCAACGGGATTGCTGCAGTTCCTCTAGAGATCAAGGGATGCTCCAGAAAATTAAACGTGAATCTACCAACTGCTGCACGGTTGCAGTACAACATGATCTCATTTAGTTAACTGCAAGGATTGTTTCAAATAAAGCTATTAAAACTAATA
>XR_005641459.1
GGGACATAAAACCCAGACGGACCTGTTTCCTCGTTCACTTCCTTCTCTGCTCTGTTCGAGGTGGCGTAAGAGCCAGAAACAACTTACTGCAAAGgtGTGAAGACTGGTGAACACCACATAAGGTGTACCTATGCCAATCAAAGATGACTGACAAGAATAAAGGACTTTAGCAGGTTGGTCTACCCTGCCCTCTCACTAATCTCAAAGCAGCTGCAAAGTGCAGAAGTGGGGGTTTGAACAAGAAGTTGGGGAAAGGATGCCCCATGGATATCTCAACATAGCCATGAGTGGATTCTTGAAGAGGAAGGCATCCATTGAAGCCTCATGTGACTGCATCAACAGCATGCTGAGGCCTTCTCATCAAAGGTACCTACTGGGTTATGGAAGTTGCTCACTTTTCTCCAACAAAGGAGTTTGCCCAGGTACCTAGCTTTGGAAGATGCTGCCATCTTCTCCACAACAAAGGGCTGCCTTTGGATGGAACTACCTAGAAACAAGCTGACTAGgTCCTAATTTGAATGTGTGAACTGAGGACATGGTCATTGCAAAAACAAAGCTCCAACAATTGAGGTTTGATGCTTTCGGACTGTGGGACAGCGCACACACCTGGGACTGCAGCAGGTGTGGCAGCATGAAATCTCTGGCTTGATCTTGTTGGTTTGGTGATGTGTCAGACTTGAGTGCGAGAACCAGACACCTGGGAGTGCTGCAGGATGAAGTCATCACATGGCCTTGATCTTATGCTCACTGTGATATGTGTTGAATTCATCTGGATCTGCTGCATTGGGATCTATGAACTTGGGTGCCTTATCCATCAGCAGTGTTGAAATGCCAACGGGATTGCTGCAGTTCCTCTAGAGATCAAGGGATGCTCCAGAAAATTAAACGTGAATCTACCAACTGCTGCACGGTTGCAGTACAACATGATCTCATTTAGTTAACTGCAAGGATTGTTTCAAATAAAGCTATTAAAACTAA
>XR_005641460.1
GCGGGACATAAAACCCAGACGGACCTGTTTCCTCGTTCACTTCCTTCTCTGCTCTGTTCGAGGTGGCGTAAGAGCCAGAAACAACTTACTGCAAAGgtGTGAAGACTGGTGAACACCACATAAGGTGTACCTATGCCAATCAAAGATGACTGACAAGAATAAAGGACTTTAGCAGGTTGGTCTACCCTGCCCTCTCACTAATCTCAAAGCAGCTGCAAAGTGCAGAAGTGGGGGTTTGAACAAGAAGTTGGGGAAAGGATGCCCCATGGATATCTCAACATAGCCATGAGTGGATTCTTGAAGAGGAAGGCATCCATTGAAGCCTCATGGCTTTTGAATAAGCTAGTAAATGACCGGTTTTCTGCCTAGTGACTGCATCAACAGCATGCTGAGGCCTTCTCATCAAAGGTACCTACTGGGTTATGGAAGTTGCTCACTTTTCTCCAACAAAGGAGTTTGCCCAGGTACCTAGCTTTGGAAGATGCTGCCATCTTCTCCACAACAAAGGGCTGCCTTTGGATGGAACTACCTAGAAACAAGCTGACTAGgTCCTAATTTGAATGTGTGAACTGAGGACATGGTCATTGCAAAAACAAAGCTCCAACAATTGAGGTTTGATGCTTTCGGACTGTGGGACAGCGCACACACCTGGGACTGCAGCAGGTGTGGCAGCATGAAATCTCTGGCTTGATCTTGTTGGTTTGGTGATGTGTCAGACTTGAGTGCGAGAACCAGACACCTGGGAGTGCTGCAGGATGAAGTCATCACATGGCCTTGATCTTATGCTCACTGTGATATGTGTTGAATTCATCTGGATCTGCTGCATTGGGATCTATGAACTTGGGTGCCTTATCCATCAGCAGTGTTGAAATGCCAACGGGATTGCTGCAGTTCCTCTAGAGATCAAGGGATGCTCCAGAAAATTAAACGTGAATCTACCAACTGCTGCACGGTTGCAGTACAACATGATCTCATTTAGTTAACTGCAAGGATTGTTTCAAATAAAGCTATTAAAACTAA
>XR_005641461.1
CGGGACATAAAACCCAGACGGACCTGTTTCCTCGTTCACTTCCTTCTCTGCTCTGTTCGAGGTGGCGTAAGAGCCAGAAACAACTTACTGCAAAGgtGTGAAGACTGGTGAACACCACATAAGGTGTACCTATGCCAATCAAAGATGACTGACAAGAATAAAGGACTTTAGCAGGTTGGTCTACCCTGCCCTCTCACTAATCTCAAAGCAGCTGCAAAGTGCAGAAGTGGGGGTTTGAACAAGAAGTTGGGGAAAGGATGCCCCATGGATATCTCAACATAGCCATGAGTGGATTCTTGAAGAGGAAGGCATCCATTGAAGCCTCATGTGACTGCATCAACAGCATGCTGAGGCCTTCTCATCAAAGGTACCTACTGGGTTATGGAAGTTGCTCACTTTTCTCCAACAAAGGAGTTTGCCCAGGTACCTAGCTTTGGAAGATGCTGCCATCTTCTCCACAACAAAGgTCCTAATTTGAATGTGTGAACTGAGGACATGGTCATTGCAAAAACAAAGCTCCAACAATTGAGGTTTGATGCTTTCGGACTGTGGGACAGCGCACACACCTGGGACTGCAGCAGGTGTGGCAGCATGAAATCTCTGGCTTGATCTTGTTGGTTTGGTGATGTGTCAGACTTGAGTGCGAGAACCAGACACCTGGGAGTGCTGCAGGATGAAGTCATCACATGGCCTTGATCTTATGCTCACTGTGATATGTGTTGAATTCATCTGGATCTGCTGCATTGGGATCTATGAACTTGGGTGCCTTATCCATCAGCAGTGTTGAAATGCCAACGGGATTGCTGCAGTTCCTCTAGAGATCAAGGGATGCTCCAGAAAATTAAACGTGAATCTACCAACTGCTGCACGGTTGCAGTACAACATGATCTCATTTAGTTAACTGCAAGGATTGTTTCAAATAAAGCTATTAAAACTAA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0007049 cell cycle biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03030 DNA replication
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU192285 False 958 lncRNA 0.46 18 11069440 11075604
XR_005641459.1 False 978 lncRNA 0.46 18 11069418 11075602
XR_005641460.1 True 1020 lncRNA 0.46 18 11069416 11075602
XR_005641461.1 False 938 lncRNA 0.46 17 11069417 11075602

Neighbor

gene id symbol gene type direction distance location
sb:cb1058 NA coding upstream 573 11063690 ~ 11068843 (+)
b3gat3 b3gat3 coding upstream 9031 11054048 ~ 11060385 (+)
naa40 naa40 coding upstream 15786 11042088 ~ 11053630 (+)
trnal-aag_7 NA coding upstream 28890 11040445 ~ 11040526 (+)
mark2b mark2 coding upstream 56510 10954531 ~ 11012906 (+)
batf2 NA coding downstream 7377 11082981 ~ 11092180 (+)
ppp2r5b ppp2r5b coding downstream 26498 11102102 ~ 11140697 (+)
LOC120573182 LOC103384160,LOC100707302,LOC104948196,LOC104918736 coding downstream 67234 11142838 ~ 11148199 (+)
LOC120573144 LOC104948199,LOC103360918 coding downstream 95415 11171019 ~ 11177041 (+)
ppp1r14bb ppp1r14b coding downstream 321280 11396884 ~ 11422251 (+)
G142540 NA non-coding upstream 656 11012299 ~ 11068760 (+)
LOC120572485 rcor2 non-coding upstream 40927 11015299 ~ 11028489 (+)
G142545 NA non-coding upstream 46605 11020267 ~ 11022811 (+)
LOC120573686 NA non-coding upstream 379380 10689711 ~ 10690036 (+)
G142450 syt4,LOC104968104,LOC102777880 non-coding upstream 393043 10644623 ~ 10676373 (+)
G142571 NA non-coding downstream 256764 11332368 ~ 11335346 (+)
G142577 NA non-coding downstream 262715 11338319 ~ 11338693 (+)
G142579 plcb3 non-coding downstream 271178 11346782 ~ 11347979 (+)
G142585 NA non-coding downstream 330069 11405673 ~ 11475004 (+)
G142586 NA non-coding downstream 333024 11408628 ~ 11437616 (+)
LOC120573689 NA other upstream 364091 10698284 ~ 10705325 (+)
tmem88b tmem88,LOC104964151,LOC103375639,LOC102237254 other upstream 545668 10514237 ~ 10523748 (+)
LOC120572381 NA other upstream 2320516 8746620 ~ 8748900 (+)
LOC120572401 NA other upstream 2453225 8614290 ~ 8616191 (+)
LOC120572397 NA other upstream 2572870 8452933 ~ 8496546 (+)
zgc:101765 LOC104948199,LOC103360918 other downstream 91802 11167406 ~ 11177041 (+)
LOC120573186 LOC108242886 other downstream 129038 11204642 ~ 11308298 (+)
trnai-aau_24 NA other downstream 382753 11458357 ~ 11458430 (+)
trnai-aau_25 NA other downstream 383562 11459166 ~ 11459239 (+)
G142598 LOC104947722,LOC102192171 other downstream 385705 11461309 ~ 11463411 (+)

Expression


Co-expression Network