LOC120572840


Basic Information

Item Value
gene id LOC120572840
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 30278333 ~ 30317223 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039822325.1
ACCAACTGTTAGGATGGAGGAAACATCTGTACTGCAGATGCTCTttctgacCTCACTGCTGAGCAGCACAACAAACCAAGtctctctgactgtgagtccCAGCAGCTCTCAGATATTTCAaggacagtctgtctctctgagctgtgaggaggacaacagctctgctggatggactctgaggaggaacacaAGTGATGAAACCAGGACTCAGTGTGGAGATGGCTGGGGAAGACCTGCTGGTTCTATCTGTAACATCAGCTCCATGGTCGAATGGTACAGTGGAGTttactggtgtgagtccagagagggagctaccagtaacagcatcaacatcactgtccctggtggaccagtgatcctgcagagtcctgtcctccctgtgacggagggagaagacctcactctgacctgtaaaacaaagaTGTCCTTCAAACTCCCAGctggtttctataaagatggctccttcatcaggactgagcctgcaggtcacatgaccatccaccatgtttccaggtctgatgaaggcctctacaagtgcaacatcagcagtgttggagagtctccacccagctgggtctctgtcacagGGAAACCAACGACCACAAGCCCATCTCCGAGTTCTCTGCCGCCCTCGGCCTCAGACCCCCTCCACCTTCTGATCAGACTGGTCTGCCACCTGGTGGTGTTCTGTCCGTACTGCATCTCCACTTTCATCATGGTGTCTTTATATCGACAGCGGGCCACAGGAAATTACTTGCCTGTCTCCGTGGTGACGACCCCACCCACCCAGGCTGAGGAGGGATTGGATGATGACTATGATGACGTCATCACCGCTGCCACCACAGAGCATCACTTCTGAACTGATCTGAAAAGAAACTCAAAGAAAACTAGGTCACCGCAATCATACTGAGGCTTGAAACAACGTGTGTTCTGCTAAGAGTTAAACTCATGGGCAACTGGACTTGGTTAAAGGTACTCAAAGACATTTCATCTCTCATCCGAGAGACTTCTTCAGGTCTGACTGAATGGTAGGAAAAACCCAGCTATTTAATCTCTGTGGGGTAGTTGTGAAGATTATCAAAACCAATTTTTTCATTAGTGATCCTGGCTGTTGGAGACACCCAGACAAAGTCTGAACAACCAACGTTGGCAATTCAAACAACCCCACAACAGTAAGAGAGCTAGGTTTCCCTACAGATCAGTCCAAACTGACCATTTTCAGAGCATATTTCAAAAAGTCCAGTTGTCCCTGAGTTTAACCCTTCCCTGGATAACTATAACCTGGATGACTGAGAACCTTTACAGACATCAGCCagtaaattattcacatttctgGAATGAATGTATGGAAATAATCTTCATCAACAATATTTCATCACAATTAACAAAAACGTTCATCTCTGTGATTATGAACTAACACAAGAGACCAACTGTCCTATCAA
>XR_005641497.1
CGTGTTAGAAAAGCAGAATAAACTGGTGTTAAAGCTGGAAGACGCTGAGAGTATTTAGTGTGGACTCCATCTTCTCTGAGCTCACagttgttctgtctgtctgcagtaaAAGCTCAAACTAACCTGAGGTCCAtttctcttcagttctgacCTCACTGCTGAGCAGCACAACAAACCAAGcctctctgactgtgagtcTCAGCAGATCTCAGATGTTTGAAGGACAGTCTGTGtctctgagctgtgaggaggacgacagctctgctggatggactctgaggaggaa
>XR_005641498.1
TGTACTGCAGATGCTCTttctgacCTCACTGCTGAGCAGCACAACAAACCAAGcctctctgactgtgagtcTCAGCAGATCTCAGATGTTTGAAGGACAGTCTGTGtctctgagctgtgaggaggacgacagctctgctggatggactctgaggaggaa
>XR_005641499.1
GATGGAGGAAACATCTGTACTGCAGATGCTCTttctgacCTCACTGCTGAGCAGCACAACAAACCAAGcctctctgactgtgagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039822325.1 True 1442 mRNA 0.47 7 30278333 30317223
XR_005641497.1 False 286 transcript 0.48 2 30297859 30299375
XR_005641498.1 False 159 transcript 0.52 3 30297859 30317196
XR_005641499.1 False 85 transcript 0.49 3 30297948 30317211

Neighbor

gene id symbol gene type direction distance location
LOC120572886 NA coding downstream 64 30273993 ~ 30278269 (-)
LOC120572839 NA coding downstream 8439 30264705 ~ 30269894 (-)
LOC120572850 NA coding downstream 53535 30216832 ~ 30224798 (-)
LOC120572852 NA coding downstream 101208 30173818 ~ 30177125 (-)
LOC120572594 nfxl1 coding downstream 473432 29794709 ~ 29804901 (-)
LOC120572856 NA coding upstream 7090 30324313 ~ 30330049 (-)
LOC120572599 NA coding upstream 18045 30335268 ~ 30375034 (-)
LOC120572898 NA coding upstream 76324 30393547 ~ 30395180 (-)
LOC120572857 NA coding upstream 89768 30406991 ~ 30417244 (-)
LOC120572951 NA coding upstream 100365 30417588 ~ 30422700 (-)
G147710 NA non-coding downstream 23582 30225225 ~ 30254751 (-)
LOC120572986 NA non-coding downstream 43317 30234172 ~ 30235016 (-)
G147698 NA non-coding downstream 105689 30171413 ~ 30172644 (-)
G147658 NA non-coding downstream 146346 30100012 ~ 30131987 (-)
G147659 NA non-coding downstream 165264 30102854 ~ 30113069 (-)
G147735 NA non-coding upstream 127196 30444419 ~ 30471278 (-)
G147738 NA non-coding upstream 136777 30454000 ~ 30454756 (-)
G147733 NA non-coding upstream 167053 30484276 ~ 30487033 (-)
LOC120572974 NA non-coding upstream 196429 30513652 ~ 30515051 (-)
LOC120572999 NA non-coding upstream 277689 30594912 ~ 30596759 (-)
LOC120572750 LOC106608414,LOC107673152,LOC108275467,LOC107574437,LOC107750191 other downstream 155457 30105360 ~ 30122876 (-)
LOC120572598 nfxl1 other downstream 191109 30068430 ~ 30087224 (-)
G147653 atp6v1g1,LOC103369321,LOC101172700,LOC106512071 other downstream 219130 30056592 ~ 30059203 (-)
G147634 prpf4 other downstream 236748 30036418 ~ 30041585 (-)
cdc26 cdc26 other downstream 242444 29981706 ~ 30035889 (-)
LOC120572874 NA other upstream 113578 30430801 ~ 30433243 (-)
LOC120572884 NA other upstream 153272 30470495 ~ 30474883 (-)
LOC120572891 NA other upstream 179842 30497065 ~ 30510026 (-)
LOC120572909 NA other upstream 483586 30800809 ~ 30867390 (-)
LOC120572603 NA other upstream 512390 30829613 ~ 30831330 (-)

Expression


Co-expression Network