G151344 (smarca4)


Basic Information

Item Value
gene id G151344
gene name smarca4
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 3311727 ~ 3316915 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU205089
TCCTTATATTTGATGACGGCGTCGACgatcttcttcatcttcttagTGAGGGACAGAGGGTTGGGAGAGAGCTTCTCGGCGGGCGGGCGGCCGCGTTTCTTCGCCTTCTTCACCTCCTCGTCCTTGTCCCGCCCGCGGCCGCTGCTGGAGCTGGGCGTGGCCGGCCCGCCGTCGTGGTCGCGGTCTCTCTTGCGCTTTCTGGTCGTCTTTTTGTGACGCACTTCCTCCTCGATGTCCTCTAGATTTCCCTCCTCTATGGCCTTGAGCCACTGTTTCTCAGTGAGCGAGTCGCTGTAGTCCACTTCCTTGCGTTGGCGCGATCCGCGGCCAAacatcttctcctcctcctcttcgcaAGTTAGCCGCTCGACCTCGGCGTCGTCTTTCAGAATCCAGCTGGGCATGTCGTCCTCCTCCATCAGACGCGGTTTCCTCTTAGGGTTGCGGGCGTCCTCGCGGCGCCTGTCCAGATCCATGCGCATGAACTGTTCAAACTCCTCTTCACTTCTGGCTATCATCTGATTGACCGTCTCGTCATCGGGCACTTCGTCTTCCTCCCACGCCCCCCTAGTACGACAGCCTCCTCGAGCCCCGACCTCGTCCTGTTCCTCGTGCTCCAGGATGGCCTGCAAGAAGGCCCGACGCTCGCAGCCGGACGACTTCTGGTCGAACATGCCCGCCTGGATGACCTTCTGGTCCACGTTCAGTTTGTACTTGGCTGCCGCCAGGATCTTCTCCTCCACGCTGTTGACGGTGCAGAGGCGCAGCACGCGCACCTCGTTCTGCTGCCCGATGCGGTGGGCTCGGTCCTGGGCCTGCAGGTCCTGGAGGAGCACAAACACGCGGGTTAGGTCAAGTGGATGGAGCGGTTGTGGttctgactccaccagatggattgcttaCTTCACGGCTTTTGACGCGTGAGTGGTCT

Function

symbol description
smarca4 Enables several functions, including DNA polymerase binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and lysine-acetylated histone binding activity. Contributes to RNA polymerase I core promoter sequence-specific DNA binding activity. Involved in several processes, including chromatin organization; regulation of signal transduction; and regulation of transcription, DNA-templated. Located in chromatin and nucleolus. Part of SWI/SNF complex and npBAF complex. Implicated in Coffin-Siris syndrome 4; hepatocellular carcinoma; lung non-small cell carcinoma; and rhabdoid cancer. Biomarker of prostate cancer.

NR:

description
PREDICTED: transcription activator BRG1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205089 True 931 TUCP 0.60 4 3311727 3316915

Neighbor

gene id symbol gene type direction distance location
rtbdn rtbdn,LOC103364965 coding downstream 170017 3120685 ~ 3141710 (-)
hook2 LOC103364969 coding downstream 276715 3008089 ~ 3035012 (-)
trir csgr03h19orf43,clg4h19orf43,LOC103154935,LOC107087651,LOC103376077,LOC102224489 coding downstream 308335 2999650 ~ 3003392 (-)
LOC120574018 NA coding downstream 468914 2840433 ~ 2842813 (-)
si:ch211-106h11.3 LOC103375031 coding downstream 491406 2801382 ~ 2820321 (-)
s1pr5a s1pr5,LOC103393734,LOC104952115 coding upstream 86085 3403000 ~ 3407242 (-)
si:dkeyp-69e1.8 NA coding upstream 201009 3517924 ~ 3527374 (-)
hmgxb4a hmgxb4,LOC102782297 coding upstream 212551 3529466 ~ 3541172 (-)
ankrd54 ankrd54 coding upstream 226109 3543024 ~ 3549032 (-)
foxred2 foxred2 coding upstream 232312 3549227 ~ 3561807 (-)
G151347 NA non-coding downstream 49844 3253008 ~ 3261883 (-)
G151337 NA non-coding downstream 104687 3206511 ~ 3207040 (-)
G151316 NA non-coding downstream 164103 3146450 ~ 3147624 (-)
G151289 NA non-coding downstream 261479 3050011 ~ 3050248 (-)
G151287 NA non-coding downstream 267792 3043670 ~ 3043935 (-)
G151374 NA non-coding upstream 1189 3318104 ~ 3321853 (-)
G151375 NA non-coding upstream 5278 3322193 ~ 3322479 (-)
G151376 NA non-coding upstream 10229 3327144 ~ 3327367 (-)
G151399 kri1,LOC102780649 non-coding upstream 58964 3375879 ~ 3380665 (-)
G151398 NA non-coding upstream 62271 3379186 ~ 3379538 (-)
G151227 LOC103393680 other downstream 396360 2911326 ~ 2915367 (-)
G151216 LOC106957010,LOC107376217,LOC103393680 other downstream 415384 2873918 ~ 2896343 (-)
G151146 NA other downstream 506316 2399809 ~ 2805411 (-)
farsa farsa other downstream 1150003 2132732 ~ 2161724 (-)
LOC120573864 NA other downstream 1439635 1845740 ~ 1872092 (-)
LOC120575464 NA other upstream 1044933 4361848 ~ 4367343 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other upstream 1099262 4416177 ~ 4464991 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other upstream 1268258 4585173 ~ 4765493 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other upstream 1861401 5178316 ~ 5227241 (-)
G152114 rbx1 other upstream 2144931 5461846 ~ 5464418 (-)

Expression


Co-expression Network