trir (csgr03h19orf43,clg4h19orf43,LOC103154935,LOC107087651,LOC103376077,LOC102224489)


Basic Information

Item Value
gene id trir
gene name csgr03h19orf43,clg4h19orf43,LOC103154935,LOC107087651,LOC103376077,LOC102224489
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2999650 ~ 3003392 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824168.1
GACGTCATCAAGAGAAATTAAACATGGCCGACAGCCAGTCGGTGCTAGATGGCGAAAGTTAGCTAAACGCGTTGGGTAAAATCTGCGAACCTCTCAGTCTTTGCTGCGGGTATTTGAACTTTGTTGCGTGCTTTAACGGTAGCATTGTATTTGGGAACATTTCACCCGTTAAATGGAGGTTCTAGTTGAGTGTGTTTGTCCGTAAAAGGCCTCACTAAACCGGACGTTAGCCCGCAGTGTTAGCCACGTTAGCAGACCAGcgcctgcttttgtttttgtaacgttaacgttaacgttatgcGCTAGAAGGCTGGCACCGGGAAGCCTCGTTAACCTTTTTATATTTCGcccttttctttgtgtgtttttttgaactggacttgtagctttttttttagctaaCCTGCGGAGGTTTTAGTTGTGTGTTGGGGTCCGGGGTGGGGTCCGGGTCCTGCCCGTCTTGCAGCGTGTTGGCACGGTTGTTTATTTGATGCCAGCTTCGCAACAAAGCCAACTTCTCCGAAAACGGACTGTACCCGTTGGGGAACATTACGAGAACATGGATTCAAAGCGCTCACACGGAAGACCTCAGACGGCCAGACCCGGcggaggcagcagcagcagcagcagcggcgacTCGAGCTGCGGCAGCCCCGCGTCGCCCTCCAGCAGACCCGCACCGGCGGCGAGCAAAGCCCCGGTGCCCGGGGGAAACGCCTTCGCCAACGACGGCAGCTTCATGGAGATGTTCAAGaagaagatggaggaggaggagaagaggaaaaaagagacgCAGCAAacaggtggagaggagaggagagccaCCACCGAGCAAGGACAGACATCAGTGGAAAAGAAGCCCCCTCCCGTGACCAGCTTTGTAAGGGGTTTGGCAGTTGTGGGGAAGCGCAGAGGTGGTGTGTTCCTAAAGACCGGCATGGTTGCGAAGAAGCAGAAAGACGACTCAGAAGCGGAGCCAGGCAAGAGCGATGCTTGGTCAAAGTACATGGCTGAGGTCAAAAAGTACAAAGCCCACCAGTGTGGCGACGACGATAAGACCCGCCCTCTGGTCAAGTAGGTCTCCGAAGGGGCCCGACTACGTGGAAGCGACAGCGTTTCGAGGGGACGACCGTCTGGGAGAAGCTCCGGGATGGCCGGGCCAGTCCTGACCTTCTCACGCTGCCACTTCAAGTCCCCCTTCGCATCAAGTCTTTCACAAACTGCTTAGATTGACAGGCCTTTCCccctttttgtattgtttttttgtttgtttttttgtctcgcTTTGTTATTTGTCGGACTCCGGTAATCGAAAGTCCGAAGGTGATTCCTAGACCTGCCGttcattattgatgattattaaACGTTCTCACATTTTGTTATGTCTGGGTTAAGTTAGGTTTCATTAATAGTTGGGTTTGATTTTTATAGCCAAATCAAGGTGACAATTAAATCTACACTGCCCATTAA
>XM_039824169.1
ACGTCATCAAGAGAAATTAAACATGGCCGACAGCCAGTCGGTGCTAGATGGCGAAAGTTAGCTAAACGCGTTGGGTAAAATCTGCGAACCTCTCAGTCTTTGCTGCGGGTATTTGAACTTTGTTGCGTGCTTTAACGGTAGCATTGTATTTGGGAACATTTCACCCGTTAAATGGAGGTTCTAGTTGAGTGTGTTTGTCCGTAAAAGGCCTCACTAAACCGGACGTTAGCCCGCAGTGTTAGCCACGTTAGCAGACCAGcgcctgcttttgtttttgtaacgttaacgttaacgttatgcGCTAGAAGGCTGGCACCGGGAAGCCTCGTTAACCTTTTTATATTTCGcccttttctttgtgtgtttttttgaactggacttgtagctttttttttagctaaCCTGCGGAGGTTTTAGTTGTGTGTTGGGGTCCGGGGTGGGGTCCGGGTCCTGCCCGTCTTGCAGCGTGTTGGCACGGTTGTTTATTTGATGCCAGCTTCGCAACAAAGCCAACTTCTCCGAAAACGGACTGTACCCGTTGGGGAACATTACGAGAACATGGATTCAAAGCGCTCACACGGAAGACCTCAGACGGCCAGACCCGGcggaggcagcagcagcagcagcagcggcgacTCGAGCTGCGGCAGCCCCGCGTCGCCCTCCAGCAGACCCGCACCGGCGGCGAGCAAAGCCCCGGTGCCCGGGGGAAACGCCTTCGCCAACGACGGCAGCTTCATGGAGATGTTCAAGaagaagatggaggaggaggagaagaggaaaaaagagacgCAGCAAacaggtggagaggagaggagagccaCCACCGAGCAAGGACAGACATCAGTGGAAAAGAAGCCCCCTCCCGTGACCAGCTTTGTGGGGAAGCGCAGAGGTGGTGTGTTCCTAAAGACCGGCATGGTTGCGAAGAAGCAGAAAGACGACTCAGAAGCGGAGCCAGGCAAGAGCGATGCTTGGTCAAAGTACATGGCTGAGGTCAAAAAGTACAAAGCCCACCAGTGTGGCGACGACGATAAGACCCGCCCTCTGGTCAAGTAGGTCTCCGAAGGGGCCCGACTACGTGGAAGCGACAGCGTTTCGAGGGGACGACCGTCTGGGAGAAGCTCCGGGATGGCCGGGCCAGTCCTGACCTTCTCACGCTGCCACTTCAAGTCCCCCTTCGCATCAAGTCTTTCACAAACTGCTTAGATTGACAGGCCTTTCCccctttttgtattgtttttttgtttgtttttttgtctcgcTTTGTTATTTGTCGGACTCCGGTAATCGAAAGTCCGAAGGTGATTCCTAGACCTGCCGttcattattgatgattattaaACGTTCTCACATTTTGTTATGTCTGGGTTAAGTTAGGTTTCATTAATAGTTGGGTTTGATTTTTATAGCCAAATCAAGGTGACAATTAAATCTACACTGCCCATTAA

Function

NR:

description
PREDICTED: uncharacterized protein C19orf43 homolog isoform X1

GO: NA

KEGG:

id description
K01149 TRIR; telomerase RNA component interacting RNase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824168.1 True 1470 mRNA 0.51 3 2999650 3003392
XM_039824169.1 False 1451 mRNA 0.51 3 2999650 3003391

Neighbor

gene id symbol gene type direction distance location
LOC120574018 NA coding downstream 156837 2840433 ~ 2842813 (-)
si:ch211-106h11.3 LOC103375031 coding downstream 179329 2801382 ~ 2820321 (-)
LOC120574080 gfi1,LOC102083319,LOC102796239,LOC103376798,LOC101077887 coding downstream 249397 2737935 ~ 2750253 (-)
pglyrp6 NA coding downstream 549181 2438102 ~ 2450469 (-)
si:ch211-194b1.1 wiz,LOC107731472 coding downstream 566430 2355442 ~ 2433220 (-)
hook2 LOC103364969 coding upstream 4697 3008089 ~ 3035012 (-)
rtbdn rtbdn,LOC103364965 coding upstream 117293 3120685 ~ 3141710 (-)
s1pr5a s1pr5,LOC103393734,LOC104952115 coding upstream 399608 3403000 ~ 3407242 (-)
si:dkeyp-69e1.8 NA coding upstream 514532 3517924 ~ 3527374 (-)
hmgxb4a hmgxb4,LOC102782297 coding upstream 526074 3529466 ~ 3541172 (-)
G151282 NA non-coding downstream 12798 2986093 ~ 2986852 (-)
G151275 NA non-coding downstream 29341 2969954 ~ 2970309 (-)
G151261 NA non-coding downstream 50031 2949085 ~ 2949619 (-)
G151195 NA non-coding downstream 55033 2942281 ~ 2944617 (-)
G151194 NA non-coding downstream 70153 2637774 ~ 2929497 (-)
G151286 NA non-coding upstream 36587 3039979 ~ 3040406 (-)
G151287 NA non-coding upstream 40278 3043670 ~ 3043935 (-)
G151289 NA non-coding upstream 46619 3050011 ~ 3050248 (-)
G151316 NA non-coding upstream 143058 3146450 ~ 3147624 (-)
G151337 NA non-coding upstream 203119 3206511 ~ 3207040 (-)
G151227 LOC103393680 other downstream 84283 2911326 ~ 2915367 (-)
G151216 LOC106957010,LOC107376217,LOC103393680 other downstream 103307 2873918 ~ 2896343 (-)
G151146 NA other downstream 194239 2399809 ~ 2805411 (-)
farsa farsa other downstream 837926 2132732 ~ 2161724 (-)
LOC120573864 NA other downstream 1127558 1845740 ~ 1872092 (-)
G151344 smarca4 other upstream 308335 3311727 ~ 3316915 (-)
LOC120575464 NA other upstream 1358456 4361848 ~ 4367343 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other upstream 1412785 4416177 ~ 4464991 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other upstream 1581781 4585173 ~ 4765493 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other upstream 2174924 5178316 ~ 5227241 (-)

Expression


Co-expression Network