G153111 (arhgdia,LOC100706235,LOC107087451)


Basic Information

Item Value
gene id G153111
gene name arhgdia,LOC100706235,LOC107087451
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8463179 ~ 8558912 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU207394
CTAGGAAAACACTCCCTCACTGATGCATTCAGTGGCTCTAATGTCATCATTAGCATTTTGTGTAGTGTACTACAGCTGGAGGAAAAGGAAACCTGAAAATAAGAGCTGCAGAAACTTATTCTAACTTTGACTCACCTTCTCAGAGTTGATGCTCAGCTTTTTCTCGACGTGCACGTGGATTTCTCCGTTACTCTCCGGGACCGGCGTGGACTCCCTGGGTGTCTCCTCCCGCttctcctcatcctcatcctcgTCGAAGGGTAACGGGATACCGTCAGTGACATACTCCTTCAGACACTTCATGTTGTGTTTCTTCAGCAGCTGCTCCGTGTCCGGGTCCACCACTACGAGCTCCAGCCGGCCCACGGTGGCTCGTATCCGGGACACGACCTGCTGGTGGCTCTCGTTCTCCACGTCCTCCCCGTTGACGAACACCAGCCGGTCTCCGGCGCGGAGCCTCGAGGTTTCAGCCGGGCTGTCGGGCTCCACTAACCGGATAAACTGCCCCGTCTTGCCTTTCTCCCCGTGGAGGTGGAAGCCGTAGCCGTTCTCCCCCTTCTCCAGCGTGCAGAGCCGGGGGCGCAGATGCTGGCTTTTGCTCGGCATGGTATATAGGCTTCACTCGCCTTCACACACTGCTTCTGAACTGTGTCTCAAACTGTTGTTTAAAGTGGAAATGACCACAAGACCCGCTCCAGGATGCTGCtggggaggggtgtgtgtgtgtgtgaatgagtggtaccccttaaaaaaacaaattccaacccCCGCCCTCTTGTTGGGGAGATTAGTCCGTGAGAAACGGTGCTGGTGTTCCACTTTCACACACACGAGTCCAAGTCTGACTTGATCCTCACCCTTGTGTAAATCCTCACTGTGACTCCTGCTATCAGACAGTGGAGGTCCTGACCCGAGGACTGAATAGAGGCCGATTAGAGTCACACAGCAGCTCCCTCTCACTGTGCGAGAAAAGTAGAAAAGCCACTCAGGAAGAGGGAGGCAGAAGGCTGAGGAAGATGTCGATGGAGGATGgcgaggggagggggaggggatcAGTCTTTCCAATCTTTCTTGATAGTGAGGCACCAATCCCAGGAGAGATGATCGTGTTTGTCGTCATCGGTGAACTTGGACTTGATGGTGTAGGTGCCGCGGGCCAGCATCCCTTTGGGCGCCTCCTCCATGGTGGTGAGGAACTCGTATTCCTCGTTCGGTCTGGGGCCGTAGCTGCCGACCATGTAGTCCGACTTGTCAAGTTTTACTCCTTTCCTGAAGGTTTGCTGAGTGTACTTCAGGCCTGACACAATTTCCTTGTTGAcCTTGAAGTTGATCTTTATTCTGTATTCGACTCCCTCCTTCAGCACAAATGGGTTCTTCTTGAAGTTTTCCAGGTCTCCTGGAAGGGAAAGCAGCacagcatgaaaagaaaagtcaaGCAAGAGCGAAGACTGTCCAGATATATACTTCAAGATCAGTTTGGAACAGCATGAACGCATTTTACACAGTCTAAAACATATAAACTAAAGTTTAATACACACGTAGGGATTTTATGGTTACGTTTTACCGGAGGAAAAGAAATCCCATTCTCCAGCAAAGTTGTATTTTGATTTCTCAACACGCTGTAGTAATGATACTGGCCACCAGGTGGCACAGTGAGCCAAGCACCGTTGCTCTGTTGGAGCTCTGTGTGACCAGGAAATGGCTCATTAACCCACTTACACAGGATTCATGTCATTACTAATGCCATTTGTACACAAGGACGGGAGTGATTACAGTTTATAATTAATGTTACTACGAGCCAATTCTTCCAGCGTGTCTGCTGCGAGGACAGACAAGCGCCTACATGTGGGCTTCTGTCAATCTTTCAGATGGTAAAAGATACATGATCCCATGTTCACTGTAAAAAGCTGCTGTTGGGTTTTGTCCCGATTCCCAGCCTCACACAGACCACGTTATGTGCGCCACTTACCCAGCAGGTCAAGGACTAGAGGGCCCGGGGCCGTTTCACATAACAGAGTCATTCGCGTCACCTGGACGTTGGGGGCGCTGGGATCtttgagagggagagggagagaacggGCACAAATACAAAATTAGGATCAATTCATAGCACCTGAGAAAAATGATGACAGAATCCAATTGTCCAATCCAAATTGAAGTACCTCATCCTCCattctttttcatttaaatggtTTTGCGTTCAAATATTTAATGagtatttttcttaaaatggtCAATCACACACCTTGCTAGTTcgatttttaaatagtttgatATGTGTGTGAAGTTGTAATtctaacaataaaaaaacacttcagtACTTTCGTCCTTCCTCCGCCCCACAGTAGTAAACTGTCTCAGGGGACAGGAAGGCCCTCTCTCTTCCACTCAATGCGACCAGGAGGGCTACATTTGCAACCTTCTGAAAACGGGCCGTTAACAGCACAGCTCTGATAAACCCTGGGCAGTGACCAGAGCCCTTTCCCACCGCTGAGGGGTTTTCATGCGGGCTTCAGGATCGGCTTCCATGCAAATTCAATATATTTCTTTATTgatttgaatttattttcaatactTCAGCGAGTGATAATGGTCGGATAATCTACTCTTCACCACAAAAGCTAATTTAGCAAAAACTAGCCAATACTGAGTAACTGGATACTGGTCAGCTACCACACAGAATATGTAGTCATGCTATTTGAAAGTAACAACATCCATATGATGACAATTTTCAGActgatcattttttttttcaatttcaaatttcatgttgctttattggcatgacaaaaaatacatctgtgttgcaaTGATCATTTCCTGTACTTTTTATGAGAGaagcgagagcgagagagagagagaagcgagagcgagagagagcgagagagagagaaagagatattgGCTGTTTTGCTTATGCTTGTCGTTAGAAAAGTTGCTGAGGGGATCACCAACCTGCAACCACAGCAACGTTGCCCAGCAGTGTCTCCTTGTACTTGCGCAGGCTTTCATCATCCTGGTCCAGCGCCTGGATCTCCTGTAAGCTCTTCTGGGCGGGAGGTTTGTAGTTGACGGAGCTTTCGTCAGACTCGTTGGCTGCTGCGAGCGCGGCCAGCTGCTCTGGTGTAGGCTCCTGCTCTGCCATAGTATGCTAATCACAGCAAGAGAGTGACCGCAGAGAGGTTAGAGATCAGTGAAAATAAAGTAACAAGGACTGGCAGCAGGACCGCTTACCCTTTTACTCTCTACTTTTGCTGTAATGAAACTGGACCTACATCCTACATGTGCAGCAGGGCAGCCCGTGGTTATTATTAGACATCCGGCTGCTGGATGATTGTTACGGATTACTTATCCAGGAGGGAAACCTCACTGAACTTTGACCTTTGTaaagcagcagttcatgtagaaagaAACGCCACAAATCACATAATTTCTCTTAAAACAATATTTCCACCTGGTACTAAAATCCGATCCGAGggatccgatcacaagtggaccCATTTTTCACAAACCACATATGTCCCAAACATTCTGACAAGGACAAATCAGGAGAATATTTATCTTGTTTGTGACCAGTTTCTGTCTCAGGGACAAACTCTTGCATGACCTGGCAACACAGATACGCAAATGTTAACTAGGAGAATGGCCTAACAAAACTTATTTGGGTAATGCTAAATATGCCTTTTATCGGTGTACATATCTAATGtttgcaaaagaaaataaattatgcaAATACATCTTTTGATCCATGCACGCACACAACGATCGCTACACTTTTAAATGGGGCCACGcccatttaggagacaggaagtgtgtaccgtttcataccattggTGCAGGCCCCGGTGCCCGTCAGTAGACAAGGACAAAGACTGTAGGCAGCACTTTTTCATTAGTCATCGCAAGTTTCTAATGTATGATTTATGTGAGAGTAACAActgaaatgtacacacacacacggtatgTGCAAACGGTGTGTTTGTacgtgtttatttgcatatagaGCGGGGAAGGGAGATCCAATCAGAAGTGGTCACTCAAGACGCATTTGGAGACACATTCCTACATACCTACTTAAAGCTGTCCACTAGTGATAGGACCACTCAGATAGGATTTTAATAACATGTGAAAATGGGGCCTTACTCTTTGTTTGCGGTTTATTTTTCCTGATATTTTCAGTGTGCTTAAGTTCGGAGATACTGCCAATAAGTGGAGCATCATGGAAGTATGAAAATGTTTCAAAACACAGCGACAACTCTTAACCTTGTCACACAGAGTGACGAGGTTAAGGATGACGAACCACAGACCTGGCTGTGAATAGTTTAGACCACAGATAGCAGGCTCACTTGATGACAAAGGATTTCTCGgtaaaatgaagtgtttacAACAAGCTCTGTGTGGATCATCAAGGCCAACATTACCCGGTATCATTATTTTTGCCAAGAGacaagtagggttgggcatcgagaaccgattcctaatcggaatcgtttcaaaaattacgattccatggtttcaaatctgatcataggttccaaattaagttttggtttccgtagcagccaggcgcttgttgttttgcagccgtgcagcacagtaagcggagctctagtgtggctttattttgcattgtaaaagctgtaaaactgcaacccacctaagaatcaaaataaaactttcctcttatttgtgaaataagcatctaacccgtttcaactccaccactcaaagaatcggaatcgagaatcgataagaaccggaatcgaaaggaagaatcggaattggaatcagaatcattaaaatccaaacgaaGCCCATCCCTAGAGACAAGGCAGTTTTATTGCGTTTTATGCTTAGACATAACCGTATGTGagcgcacaaaaaaaaaaaacacgaccaCAGACGAGAGCCAGGACACGTGTCCATCTGGCCCGCTCCACAGCGGTGACATACAGCACAGGATGGTGGTCTATTATTATCTGAGCTCCAGGCTTCTTCCCTCACTTGTCTCTCCTCCACCACAGACTGCTGGcagacaacagaaaaacagcagTGCTAAATGGGGCAATCTACACCCAGCTGCACCGTCACAGCTGATTAGAAGAGAGGACGCTGATCCTGAGCAGGGAATGGCACGACAACATAGTGAGATCATCTTCATTTTTGTGAGAACATAGGAGGTGCAACAAAACTCAATTGTTG

Function

symbol description
arhgdia Predicted to enable Rho GDP-dissociation inhibitor activity. Acts upstream of or within small GTPase mediated signal transduction. Predicted to be located in cytoplasm. Predicted to be active in cytosol and membrane. Is expressed in retinal ganglion cell layer. Used to study nephrotic syndrome. Human ortholog(s) of this gene implicated in nephrotic syndrome type 8. Orthologous to human ARHGDIA (Rho GDP dissociation inhibitor alpha).

NR:

description
PREDICTED: rho GDP-dissociation inhibitor 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207394 True 5202 lncRNA 0.46 5 8463179 8558912

Neighbor

gene id symbol gene type direction distance location
nptx1l LOC103375324,LOC104929529,LOC100699861 coding downstream 160908 8297738 ~ 8302271 (-)
LOC120573855 NA coding downstream 321346 8137584 ~ 8141833 (-)
rasd4 LOC100700404,LOC101481289,LOC104966932,LOC102192661,LOC102311216,LOC102790915 coding downstream 347180 8114974 ~ 8115999 (-)
LOC120574884 fbf1 coding downstream 377236 8073505 ~ 8085943 (-)
LOC120574881 LOC103375403,LOC100708657 coding downstream 392037 8051991 ~ 8071142 (-)
rabep2 rabep2 coding upstream 68171 8627083 ~ 8640435 (-)
si:ch211-11k18.4 LOC101474882,LOC102302894 coding upstream 92720 8651632 ~ 8659219 (-)
nudt9 nudt9 coding upstream 101390 8660302 ~ 8665654 (-)
mapk8ip3 mapk8ip3 coding upstream 180719 8739631 ~ 8768700 (-)
jpt2 hn1l coding upstream 213952 8772864 ~ 8778762 (-)
G153106 NA non-coding downstream 8511 8450022 ~ 8454668 (-)
G152925 NA non-coding downstream 169922 8293038 ~ 8293257 (-)
G152924 NA non-coding downstream 170964 8291900 ~ 8292215 (-)
G152863 NA non-coding downstream 370910 8087926 ~ 8092269 (-)
LOC120574882 NA non-coding downstream 396899 8063001 ~ 8066280 (-)
G153130 atp2a1 non-coding upstream 53365 8612277 ~ 8616112 (-)
G153142 NA non-coding upstream 85872 8644784 ~ 8645025 (-)
G153143 NA non-coding upstream 88171 8647083 ~ 8647291 (-)
G153139 NA non-coding upstream 100699 8659611 ~ 8684753 (-)
G153137 NA non-coding upstream 141197 8700109 ~ 8776266 (-)
G152952 NA other downstream 18798 8441179 ~ 8444381 (-)
LOC120574885 LOC103375378,LOC104925605,LOC104966930 other downstream 362781 8082138 ~ 8100398 (-)
grin2aa grin2a,LOC102780805 other downstream 739265 7569718 ~ 7723914 (-)
arhgdig NA other downstream 1661643 6772880 ~ 6801536 (-)
G152567 NA other downstream 1742536 6719784 ~ 6720643 (-)
G153172 mrps34,LOC102799846 other upstream 172485 8731397 ~ 8733019 (-)
natd1 natd1 other upstream 253418 8812330 ~ 8816305 (-)
tufm tufm,LOC106606342,LOC101070424,LOC106606341,LOC106931188,LOC103145412 other upstream 291531 8850443 ~ 8857571 (-)
zgc:55558 p-ras,LOC105029053,LOC104950842,LOC104930345,LOC103392975,LOC101069736,LOC106606379,LOC103023536,LOC108413997 other upstream 336870 8895782 ~ 8907662 (-)
LOC120574599 NA other upstream 628338 9187250 ~ 9204006 (-)

Expression


Co-expression Network