LOC120574547


Basic Information

Item Value
gene id LOC120574547
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15822991 ~ 15825654 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU210521
CTCACACACTCTCTTTTTCGCAAAAGGCGAGCAACATAAAAATGCACCGCTTCCAGTCGGTGTTTGGACACACTGAGGCCACTGGACTGGAGTTCATCTTTAGCAGTGGTTTGTAATGGTATCTTTAAGGGGTCTTTTTTATTTCACTGGAAGAATGGATTTGACTTGGGCCTTGGAAAGAAGATCAAGCGGGTAGCGACCTGCAGCCGCAATGACCTCAGGGTTCTTCCTCCTATCAGAGTCCTCCTCACCCCCCCGCCTGCCCAGTGTTCAGACTACCTGTTCATCCGGCTACAGCTGAACAGTAGTCTGCACATTGGTTAGGCTGGGCTGGGACGCACACACCTCCAGACACCGGCGGTGATGACACCCAATCTCCACTTGGGATAGTTTATTCCAACAGTGCCAAATGCATTGTCTTCATCTTTATACATTCCTGTGGTGCTGGTTCATCTTATCTTAGCTATCCATATCCCTAGTGCCCAGTGAAATACAGCACTGGAATAGAAATTCTTCTCACCTCCTCATCTTTGTACCAGGACAGGGACTCCGCAGTCAGGACAAACCAGTACTCCTTGGAGCCTCCTTTCATGATGCTGATGTTGATGGTTAGCCAGCCTTTCCTGATCACCTACACAGTGAGGAGAAGATGTGGGGGAGAGAAAGGGTGGTAGGGAGAGAGGGGTACCAGGAGGACGGATGAAAACAGTCAGGCTTATGCACTGGTGACAAGAGGGCCCCATAAGGGTTACTGGGATGTGACTGACACTAATAATATCTTACCTGCTTACCTCTACTAGGTCAATGTCCCCTTTTTATCTcaatattcaacatttttgtgtttATGAGACTAATATTACTTAAATATGCACTACAACATAGAAGTATGGATTAAATGTGAAACTTATTAAGTGAACAGCATGGAGTGAACAAAGGACAGTAATACTTATTGTGTAATATGGCTAAATGTATACAAAATCATCAAATGGTCAAGTTGAAAACACTGAAAGGGGATGTAGTCCTTGTTCTTTTTCCACtcaacagaaaataaatccTTAAAACAACAAACAGGACCAGATGGTGTCCAGACTATGCCAGCCCTGACACCAAAGGTCGACGATGGTATGTTAGTGTCAGTGGGTCAGTAAAAGCTAGCCTATGTACTAGTagttaaacattaaataaagcATGGTTTGTGGGTTAACTGGACACAGATATACAATGGTTTAGTTAAAAGATGGGCAGTGCAAAGGAGAGGAgtaaaggaggaaaaaaataattgcaatGGCTTGTTCACTGATCTACTAGAGTTCAAAGAGGG
>XR_005641874.1
ACCCGCTCACACACTCTCTTTTTCGCAAAAGGCGAGCAACATAAAAATGCACCGCTTCCAGTCGGTGTTTGGACACACTGAGGCCACTGGACTGGAGTTCATCTTTAGCAGTGGTTTGTAATGGTATCTTTAAGGGGTCTTTTTTATTTCACTGGAAGAATGGATTTGACTTGGGCCTTGGAAAGAAGATCAAGCGGGTAGCGACCTGCAGCCGCAATGACCTCAGGGTTCTTCCTCCTATCAGAGTCCTCCTCACCCCCCCGCCTGCCCAGTGTTCAGACTACCTGTTCATCCGGCTACAGCTGAACAGTAGTCTGCACATTGGTTAGGCTGGGCTGGGACGCACACACCTCCAGACACCGGCGGTGATGACACCCAATCTCCACTTGGGATAGTTTATTCCAACAGTGCCAAATGCATTGTCTTCATCTTTATACATTCCTGTGGTGCTGGTTCATCTTATCTTAGCTATCCATATCCCTAGTGCCCAGTGAAATACAGCACTGGAATAGAAATTCTTCTCACCTCCTCATCTTTGTACCAGGACAGGGACTCCGCAGTCAGGACAAACCAGTACTCCTTGGAGCCTCCTTTCATGATGCTGATGTTGATGGTTAGCCAGCCTTTCCTGATCACCTACACAGTGAGGAGAAGATGTGGGGGAGAGAAAGGGTGGTAGGGAGAGAGGGGTACCAGGAGGACGGATGAAAACAGTCAGGCTTATGCACTGGTGACAAGAGGGCCCCATAAGGGTTACTGGGATGTGACTGACACTAATAATATCTTACCTGCTTACCTCTACTAGGTCAATGTCCCCTTTTTATCTcaatattcaacatttttgtgtttATGAGACTAATATTACTTAAATATGCACTACAACATAGAAGTATGGATTAAATGTGAAACTTATTAAGTGAACAGCATGGAGTGAACAAAGGACAGTAATACTTATTGTGTAATATGGCTAAATGTATACAAAATCATCAAATGGTCAAGTTGAAAACACTGAAAGGGGATGTAGTCCTTGTTCTTTTTCCACtcaacagaaaataaatccTTAAAACAACAAACAGGACCAGATGGTGTCCAGACTATGCCAGCCCTGACACCAAAGGTCGACGATGGTATGTTAGTGTCAGTGGGTCAGTAAAAGCTAGCCTATGTACTAGTagttaaacattaaataaagcATGGTTTGTGGGTTAACTGGACACAGATATACAATGGTTTAGTTAAAAGATGGGCAGTGCAAAGGAGAGGAgtaaaggaggaaaaaaataattgcaatGGCTTGTTCACTGATCTACTAGAGTTCAAAGAGGGACAGAAATCTAAACAGCAAATTAAAAATCTAGtgtggagagatggagagggaggaAATACATCTGACTGAGAGGCCGAGTTAAGTGAACCATAAGCCATGAAAAATAAGCTTTTTGGAGGAACCCTCTTAGCTATGTCTCTCCATTGTTTTCCACGCAATGGGGGAAGCTATCTGTGAAAAGTGTGCTCTTATGGCTAAGTAAAGCTAAAGGGAAATTTCAAAGTCTGCTTTAGACCTCTCTTCTGCACTCCTCCATCCACACAGAGGACTGGAGTAAAGTATGGGGGAGGGAAGGGTTCATTAGTTCAAAACTGCCAACATAAACATGGGAAAGGAGGCAATTACATAGGAGCTAAACTTGTAGTTTGCATTGGTGAGGAAAAAACTTAAACTTCTAACAAGGAGTTTTAAATCCTCTAATTAAAGTCAGTTGGAAATGTTATAACCAAGTTGACATTAAGAGAATATGATGAGGTGTGAGGGTTTAGTTTCAGTAGTAGACTGTCAAGACATGTTCAATACAGTTCTGTTAATGCAAGTGTTGCAAGTGGATAATTAAAAGATGTACAATTACATCTGAGATTAACTCCAAGgattcaaagaaaaaaatatatttttaaatgattagAATGAAACATGCCAATTTAAATGAATTAGGATAGTCAGTAGGTTTTGAAAATAAAGAGATCTTACCAAGGACTTATGACTAAATCATTGAAATACATCCCAAAGCCATGACCAGTCACCATACAAAATAACTAGACAATTATTTTTGTTCAGCTCTTAATACAGAAATAACAATTAAACACTTGGAGACAGGTGGGTTTTTGGATATGTACGCACTTTCAGTAGGAAACTGTTTTAACATGCatttaatctaaaaaaaaaaaaaaaaaaagaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210521 False 1321 lncRNA 0.44 2 15823893 15825649
XR_005641874.1 True 2228 lncRNA 0.40 2 15822991 15825654

Neighbor

gene id symbol gene type direction distance location
qtrt1 qtrt1 coding downstream 26542 15790051 ~ 15796449 (-)
crb3a crb3 coding downstream 149536 15670165 ~ 15673455 (-)
LOC120574497 LOC104960315,LOC103367159 coding downstream 158394 15662274 ~ 15664597 (-)
gcgra LOC103367158 coding downstream 177369 15605503 ~ 15645622 (-)
trnae-cuc_25 NA coding downstream 258787 15564133 ~ 15564204 (-)
tmed1a tmed1 coding upstream 7846 15833500 ~ 15837068 (-)
adgrl1a adgrl1,LOC103392844 coding upstream 68355 15894009 ~ 15990185 (-)
trim35-13 LOC103364132,LOC102792268,LOC102305948,LOC101478242 coding upstream 263760 16089414 ~ 16092725 (-)
vac14 vac14 coding upstream 270057 16095711 ~ 16098989 (-)
LOC120574529 NA coding upstream 276090 16101744 ~ 16104608 (-)
G155307 LOC104918593,LOC104960307,LOC103367166 non-coding downstream 48683 15728933 ~ 15774308 (-)
G155298 LOC108429687,LOC105910964,LOC100700452,LOC104918597,LOC103367163,LOC101470440 non-coding downstream 127433 15694773 ~ 15695558 (-)
G155295 NA non-coding downstream 131339 15682369 ~ 15691652 (-)
G155239 NA non-coding downstream 190155 15551004 ~ 15632836 (-)
G155242 hgs non-coding downstream 268105 15554043 ~ 15554886 (-)
G155359 NA non-coding upstream 65367 15891021 ~ 15891931 (-)
G155439 NA non-coding upstream 228336 16053990 ~ 16054756 (-)
G155460 NA non-coding upstream 285045 16110699 ~ 16112063 (-)
G155461 NA non-coding upstream 289454 16115108 ~ 16115522 (-)
G155462 colgalt1 non-coding upstream 291465 16117119 ~ 16118492 (-)
G155323 LOC108415010,LOC101162128,LOC104945817 other downstream 7622 15813058 ~ 15815369 (-)
LOC120574502 LOC103367168,LOC100699371,LOC108241234,LOC101473146,LOC106529605 other downstream 34476 15746791 ~ 15788515 (-)
LOC120574537 NA other downstream 77419 15741763 ~ 15745572 (-)
tecra LOC103367165,LOC101076261,LOC106932487,LOC104960308,LOC108241336,LOC106529633,LOC103151989 other downstream 98569 15717847 ~ 15724422 (-)
metrnla metrnl,LOC102778978 other downstream 373474 15443124 ~ 15449517 (-)
LOC120574545 chchd5 other upstream 328133 16153787 ~ 16156067 (-)
LOC120574432 LOC103392867,LOC102312066,LOC104952514,LOC105932031,LOC102787456,LOC101484431,LOC102198284 other upstream 404805 16230459 ~ 16259025 (-)
G155583 eif3g other upstream 743792 16569446 ~ 16642131 (-)
angptl6 angptl6 other upstream 796172 16621826 ~ 16626733 (-)
mgrn1b mgrn1 other upstream 1186757 17012411 ~ 17023208 (-)

Expression


Co-expression Network