LOC120575279


Basic Information

Item Value
gene id LOC120575279
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 27399876 ~ 27400968 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU214755
CCAGGAGCCGGTTGCACCAACAGGGCTTTACTAAGCCTGGTCCTAACTGCTAAGTAGGTCTTAGTTAAGACCAGTCTTAAGAGTTGACCTAACGTCTGTTGCACCAACCAAACTTAAGCCTAGGCTTAACTACGCCTGGTCTTAGCGTTGCGCGTCCATGTGTTGTTGACCAGCAGCGTGCGTTGCTAGGTTACGCTGTAACGTTGCTAGGTTACGCTGTAAACTATCTTCCGCTGTTTTGTTAACTTGTAACGTTAGCC
>XM_039825999.1
CGTATCAATGGAGgagcaaagaaaaagaaaagaaaatttcaCCGACATTGAGATACGAAAGTTAATAGAGCTGTACAgtcagcacagacacacactgactgcCAAGCAATCAAATACAataacaaacaagaaaaaacaaacaacatggaGACAGATAACAGAGGCCATTAACGATTGCTCTGACTCCGGCTGCCTTCGGACAGAAAGCGATGTAAGAAAGAAGTGGAAAGACCTCCTGAGCAAAGCAAAAAAAGATTTGTCTGCAAAAAAACACCACCCGACCGGCGGGGGTCCTTCCCCAAAATCTTCCGTGTACAGTACCATCATTGTGGATATCTTTGGAGAGGATTCCCCGGCTTTTATTGGTTTGGTCGGTGCGGAAAGTGGCGGTACCGACATGGAAGAAACTGCTGTCTCTCCAGAGATGGATGTCGATCACTCAAGCGAGAGTGTGATTTGTgaagACTCGATGGAGGACCCAGTCACTCCACAAAGTTCTCACGAACACAGCAGCGGTGCACCGCCGGTGAAACGGATGAGGAGGCTGGATAATCTTCAGCAGACACTTCTTGAGAAAGAAATTGTTAGAGTGGAGactgaaacaaaaaaattacagaccGAGCAGGAAAAGTTGGAActtgaaaaacaaaagataTTGTTAGAAATACAGTTGCTCCAACAACAGATAAACAGGTCATCTTCGCCTATTTCTGAAGAGGATGGGCGGTCTTTTGTAATTCTGTAA

Function

GO: NA

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU214755 False 260 lncRNA 0.48 1 27399876 27400135
XM_039825999.1 True 745 mRNA 0.44 2 27400135 27400968

Neighbor

gene id symbol gene type direction distance location
jupb LOC103359554,LOC100701331,LOC102214474,LOC101475556 coding upstream 513574 26740037 ~ 26886302 (+)
LOC120574712 LOC102077703,LOC102789758,LOC102295644,LOC101478841,LOC107104997 coding upstream 910187 26484137 ~ 26489689 (+)
prl LOC103358656 coding upstream 917906 26475037 ~ 26481970 (+)
LOC120575278 NA coding upstream 1131374 26250843 ~ 26268502 (+)
LOC120574687 NA coding upstream 1173830 26202967 ~ 26226046 (+)
sept12 LOC104934564 coding downstream 37309 27438277 ~ 27538689 (+)
hao1 hao1 coding downstream 263285 27664253 ~ 27671058 (+)
LOC120575474 NA coding downstream 361010 27761978 ~ 27774184 (+)
zgc:86896 LOC104927173,LOC107391795,LOC103363450,LOC103393532 coding downstream 458855 27859823 ~ 27872407 (+)
wipi1 NA coding downstream 475167 27876135 ~ 27907407 (+)
G158377 NA non-coding upstream 405954 26977701 ~ 26993922 (+)
LOC120574958 NA non-coding upstream 492214 26890989 ~ 26907662 (+)
G158371 NA non-coding upstream 538285 26860152 ~ 26861591 (+)
LOC120575007 NA non-coding upstream 692190 26704672 ~ 26707686 (+)
G158359 NA non-coding upstream 714210 26681839 ~ 26685666 (+)
G158412 NA non-coding downstream 10696 27411664 ~ 27413867 (+)
G158420 NA non-coding downstream 139432 27540400 ~ 27540732 (+)
G158541 NA non-coding downstream 362712 27763680 ~ 27763921 (+)
G158548 NA non-coding downstream 392794 27793762 ~ 27793974 (+)
G158549 NA non-coding downstream 396081 27797049 ~ 27797731 (+)
G158291 nsf,LOC101477540,LOC102297066,LOC100697603 other upstream 771840 26575639 ~ 26628036 (+)
G158276 NA other upstream 930109 26455638 ~ 26469767 (+)
LOC120575027 NA other upstream 1308868 26089652 ~ 26091008 (+)
G158184 NA other upstream 1363712 26032304 ~ 26036164 (+)
zgc:158403 LOC103370216,LOC106932766 other upstream 1996824 25383364 ~ 25403052 (+)
smg1 smg1 other downstream 200825 27601793 ~ 27661623 (+)
G158612 NA other downstream 647544 28048512 ~ 28052449 (+)
G158767 gps1 other downstream 1125867 28526835 ~ 28532630 (+)
rras rras other downstream 1338700 28739668 ~ 28767614 (+)
prrg2 NA other downstream 1375105 28776073 ~ 28781350 (+)

Expression


Co-expression Network