nprl3 (nprl3)


Basic Information

Item Value
gene id nprl3
gene name nprl3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16944603 ~ 16961165 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824193.1
CAAGGTGACACAAAACAATCGCTGCAGTACCGGATGTGTGGAAGGGAGGATTTCTCCTCCAAATGAATTCCAGTTAAACTGTAATTTGTTCAGGGTCGGTGTTTGTTTTATGGCATACATTAATACGTCTGCAATAAGCTAATGACCACTGTTTGGTCGTAGTTAACATGATGTTCAACCCATTAGCCGGGTTACCAGAGGATCGAAAATCCATGTACAGTCAGTCACAAAACAGCGTGTACAAAACTGGCGATAAAACCAGCCCTATTAGCGTCATATTGGTTACCTCTGGCAGCCGAGGGAACAAACTACTTTTTCGATACCCTTTTCAAAGATTGGCTGAATGTCCGTCATCTCTTACAGCAAAACAACGGAGTCCATATGCTCTGAACACAACTGGGGATGGTCTTGAAGATCAGGATGGTGATTCAAGAGAACAATCTCCACTAACTGACGAACAGTTGGTAGCAGGGTTCTCTGACATCATCCTCGCCACCATTCTGGCCACCAAATCAGATATATGTGGAAAGAAGTTTGAACTGAAGATAGACAATGTTCGATTTGTGGGTCACCCTACTCTCCTTCAGCATCCTCCTATCATTCcgGTTTCTAAGACAGATCCTTCACCTAAGAGAGAAATGCCTACGATGATCTTGTTTAATGTGGTGTTTGCACTAAGGGCACAGCCTGTTCCTGCCCATGCTGAGTCACTGTACCCAgcaaatgctgacccatctgtCATCAGCTGCATGCACAACTTGTCACGTCGCATCGCCATAGCCCTTCAGCACGAGGAACGACGCTGCCAGTACCTGACCAGAGAGGCCAAACTGATGCTGGCCGTCCAGGATGAGATAACCACTATGACTGAGACGGATGGAAGCCCCCAGTCTCCATTTAGACAAATTCTTCCCAAATGTAAACTAGCCAGGGACCTGAAGGAGGCTTATGACAGCCTTTGTACAACTGGCGTGGTGCGGCTACATATTAACAACTGGCTTGAGGTGAGCTTCTGTTTACCACACAAGATCCACAGGATTGGCGGCAACTATATCCCCCCTGAGGCATTAGAGCGCAGCCTTAAGGCTATAAGACCCTATcatgctctgctgctgctggaaagtGAGAAGGCACTGCTGGGCCAGCTTCCACTGGACTGCTCACCTGCGATGGTGCGCCTCATCAAAACCTGCTCAGCGGTGAAAAACCTGCAGCAGCTCTCACAGGATGCTGACCTGGCCTTACTTCAGATCTTTCAAATTGCTGCTCACTTGGTTTATTGGGGCAAAGCGATCATCATATACCCACTGTGTGAGAACAACGTCTACATGCTGTCCCCTCATGCCAACATCTGCCTATACTCACCACTGGCTGAGCAGTTTGCCCAGCAGTTTCATGGTCATGATCTGCCCTCCATGTTAGCCAAGTTCTCACTGCCTGTCTCACTGGCCGAGTTCAGAAACCCTCTGGAAGCTCCTGCACAGGAGGCCCAGCTGATCCAGATGGTTGTGTGGATGCTCCAGCGGCGCCTGCTGATCCAGCTGCACACGTATGTCTGCCTGTTAGTGCCGCCCAGCGAGGATGAACCCGGGTTGAGGGATGAAGACCCTCCACTGGCTGCCCGTGTAGGAGGCCGCAGTCTCAGCACCCCTAGCGCTCTAAGCTTCGGTTCCCCAACCAGCAGTGATGACATGACCCTCACCAGTCCCAGTATGGACAACTCTAGTGCAGAGCTACTGCCTGGTGGGGACTCTCCGCTTAACAAGAGGATGACCGAGACGCTACTTGCCAGCCTGTCAGAGCACGAGAGGCAGGTTATTCTTAACATCCCTGCGGCACAAAATCCAGAGGATCTTCGGATGTTTGCCAGGCTGCTGCACTATTTCAGGGGACATCACCACCTGGAAGAGATTATGTACAATGAGAACATGAGGCGCTCGCAGCTCAAGACGCTGTTTGACAAGTTCCGCAGTGTCCTTGTGGTGACCAACCATGAGGATCCCATTATTTCCATCTTTCAGTCACCCATGGAGTAGAGGCACAGAGACGGTATCAGCTCTCACAAACTGGAAAATATGTCTGTTTGAGAGGAGTTAATAGCCTGCAGTGCTCACAGCTAAGTGCTATTGCTCAACGGTGTTTTAATGTGAACTGACAGGATTGTGTTAATGAGTGCAGatttacaaaatgaataaaGTGTTTGTCCTTTATGAgccaaatgtttgtttacaatattaaattattttgtaCATACCA
>XM_039824194.1
CAAGGTGACACAAAACAATCGCTGCAGTACCGGATGTGTGGAAGGGAGGATTTCTCCTCCAAATGAATTCCAGTTAAACTGTAATTTGTTCAGGGTCGGTGTTTGTTTTATGGCATACATTAATACGTCTGCAATAAGCTAATGACCACTGTTTGGTCGTAGTTAACATGATGTTCAACCCATTAGCCGGGTTACCAGAGGATCGAAAATCCATGTACAGTCAGTCACAAAACAGCGTGTACAAAACTGGCGATAAAACCAGCCCTATTAGCGTCATATTGGTTACCTCTGGCAGCCGAGGGAACAAACTACTTTTTCGATACCCTTTTCAAAGATTGGCTGAATGTCCGTCATCTCTTACAGCAAAACAACGGAGTCCATATGCTCTGAACACAACTGGGGATGGTCTTGAAGATCAGGATGGTGATTCAAGAGAACAATCTCCACTAACTGACGAACAGTTGGTAGCAGGGTTCTCTGACATCATCCTCGCCACCATTCTGGCCACCAAATCAGATATATGTGGAAAGAAGTTTGAACTGAAGATAGACAATGTTCGATTTGTGGGTCACCCTACTCTCCTTCAGCATCCTCCTATCATTCcgGTTTCTAAGACAGATCCTTCACCTAAGAGAGAAATGCCTACGATGATCTTGTTTAATGTGGTGTTTGCACTAAGGgcaaatgctgacccatctgtCATCAGCTGCATGCACAACTTGTCACGTCGCATCGCCATAGCCCTTCAGCACGAGGAACGACGCTGCCAGTACCTGACCAGAGAGGCCAAACTGATGCTGGCCGTCCAGGATGAGATAACCACTATGACTGAGACGGATGGAAGCCCCCAGTCTCCATTTAGACAAATTCTTCCCAAATGTAAACTAGCCAGGGACCTGAAGGAGGCTTATGACAGCCTTTGTACAACTGGCGTGGTGCGGCTACATATTAACAACTGGCTTGAGGTGAGCTTCTGTTTACCACACAAGATCCACAGGATTGGCGGCAACTATATCCCCCCTGAGGCATTAGAGCGCAGCCTTAAGGCTATAAGACCCTATcatgctctgctgctgctggaaagtGAGAAGGCACTGCTGGGCCAGCTTCCACTGGACTGCTCACCTGCGATGGTGCGCCTCATCAAAACCTGCTCAGCGGTGAAAAACCTGCAGCAGCTCTCACAGGATGCTGACCTGGCCTTACTTCAGATCTTTCAAATTGCTGCTCACTTGGTTTATTGGGGCAAAGCGATCATCATATACCCACTGTGTGAGAACAACGTCTACATGCTGTCCCCTCATGCCAACATCTGCCTATACTCACCACTGGCTGAGCAGTTTGCCCAGCAGTTTCATGGTCATGATCTGCCCTCCATGTTAGCCAAGTTCTCACTGCCTGTCTCACTGGCCGAGTTCAGAAACCCTCTGGAAGCTCCTGCACAGGAGGCCCAGCTGATCCAGATGGTTGTGTGGATGCTCCAGCGGCGCCTGCTGATCCAGCTGCACACGTATGTCTGCCTGTTAGTGCCGCCCAGCGAGGATGAACCCGGGTTGAGGGATGAAGACCCTCCACTGGCTGCCCGTGTAGGAGGCCGCAGTCTCAGCACCCCTAGCGCTCTAAGCTTCGGTTCCCCAACCAGCAGTGATGACATGACCCTCACCAGTCCCAGTATGGACAACTCTAGTGCAGAGCTACTGCCTGGTGGGGACTCTCCGCTTAACAAGAGGATGACCGAGACGCTACTTGCCAGCCTGTCAGAGCACGAGAGGCAGGTTATTCTTAACATCCCTGCGGCACAAAATCCAGAGGATCTTCGGATGTTTGCCAGGCTGCTGCACTATTTCAGGGGACATCACCACCTGGAAGAGATTATGTACAATGAGAACATGAGGCGCTCGCAGCTCAAGACGCTGTTTGACAAGTTCCGCAGTGTCCTTGTGGTGACCAACCATGAGGATCCCATTATTTCCATCTTTCAGTCACCCATGGAGTAGAGGCACAGAGACGGTATCAGCTCTCACAAACTGGAAAATATGTCTGTTTGAGAGGAGTTAATAGCCTGCAGTGCTCACAGCTAAGTGCTATTGCTCAACGGTGTTTTAATGTGAACTGACAGGATTGTGTTAATGAGTGCAGatttacaaaatgaataaaGTGTTTGTCCTTTATGAgccaaatgtttgtttacaatattaaattattttgtaCATACCA
>XM_039824195.1
CAAGGTGACACAAAACAATCGCTGCAGTACCGGATGTGTGGAAGGGAGGATTTCTCCTCCAAATGAATTCCAGTTAAACTGTAATTTGTTCAGGGTCGGTGTTTGTTTTATGGCATACATTAATACGTCTGCAATAAGCTAATGACCACTGTTTGGTCGTAGTTAACATGATGTTCAACCCATTAGCCGGGTTACCAGAGGATCGAAAATCCATGTACAGTCAGTCACAAAACAGCGTGTACAAAACTGGCGATAAAACCAGCCCTATTAGCGTCATATTGGTTACCTCTGGCAGCCGAGGGAACAAACTACTTTTTCGATACCCTTTTCAAAGATTGGCTGAATGTCCGTCATCTCTTACAGCAAAACAACGGAGTCCATATGCTCTGAACACAACTGGGGATGGTCTTGAAGATCAGGATGGTGATTCAAGGTTCTCTGACATCATCCTCGCCACCATTCTGGCCACCAAATCAGATATATGTGGAAAGAAGTTTGAACTGAAGATAGACAATGTTCGATTTGTGGGTCACCCTACTCTCCTTCAGCATCCTCCTATCATTCcgGTTTCTAAGACAGATCCTTCACCTAAGAGAGAAATGCCTACGATGATCTTGTTTAATGTGGTGTTTGCACTAAGGGCACAGCCTGTTCCTGCCCATGCTGAGTCACTGTACCCAgcaaatgctgacccatctgtCATCAGCTGCATGCACAACTTGTCACGTCGCATCGCCATAGCCCTTCAGCACGAGGAACGACGCTGCCAGTACCTGACCAGAGAGGCCAAACTGATGCTGGCCGTCCAGGATGAGATAACCACTATGACTGAGACGGATGGAAGCCCCCAGTCTCCATTTAGACAAATTCTTCCCAAATGTAAACTAGCCAGGGACCTGAAGGAGGCTTATGACAGCCTTTGTACAACTGGCGTGGTGCGGCTACATATTAACAACTGGCTTGAGGTGAGCTTCTGTTTACCACACAAGATCCACAGGATTGGCGGCAACTATATCCCCCCTGAGGCATTAGAGCGCAGCCTTAAGGCTATAAGACCCTATcatgctctgctgctgctggaaagtGAGAAGGCACTGCTGGGCCAGCTTCCACTGGACTGCTCACCTGCGATGGTGCGCCTCATCAAAACCTGCTCAGCGGTGAAAAACCTGCAGCAGCTCTCACAGGATGCTGACCTGGCCTTACTTCAGATCTTTCAAATTGCTGCTCACTTGGTTTATTGGGGCAAAGCGATCATCATATACCCACTGTGTGAGAACAACGTCTACATGCTGTCCCCTCATGCCAACATCTGCCTATACTCACCACTGGCTGAGCAGTTTGCCCAGCAGTTTCATGGTCATGATCTGCCCTCCATGTTAGCCAAGTTCTCACTGCCTGTCTCACTGGCCGAGTTCAGAAACCCTCTGGAAGCTCCTGCACAGGAGGCCCAGCTGATCCAGATGGTTGTGTGGATGCTCCAGCGGCGCCTGCTGATCCAGCTGCACACGTATGTCTGCCTGTTAGTGCCGCCCAGCGAGGATGAACCCGGGTTGAGGGATGAAGACCCTCCACTGGCTGCCCGTGTAGGAGGCCGCAGTCTCAGCACCCCTAGCGCTCTAAGCTTCGGTTCCCCAACCAGCAGTGATGACATGACCCTCACCAGTCCCAGTATGGACAACTCTAGTGCAGAGCTACTGCCTGGTGGGGACTCTCCGCTTAACAAGAGGATGACCGAGACGCTACTTGCCAGCCTGTCAGAGCACGAGAGGCAGGTTATTCTTAACATCCCTGCGGCACAAAATCCAGAGGATCTTCGGATGTTTGCCAGGCTGCTGCACTATTTCAGGGGACATCACCACCTGGAAGAGATTATGTACAATGAGAACATGAGGCGCTCGCAGCTCAAGACGCTGTTTGACAAGTTCCGCAGTGTCCTTGTGGTGACCAACCATGAGGATCCCATTATTTCCATCTTTCAGTCACCCATGGAGTAGAGGCACAGAGACGGTATCAGCTCTCACAAACTGGAAAATATGTCTGTTTGAGAGGAGTTAATAGCCTGCAGTGCTCACAGCTAAGTGCTATTGCTCAACGGTGTTTTAATGTGAACTGACAGGATTGTGTTAATGAGTGCAGatttacaaaatgaataaaGTGTTTGTCCTTTATGAgccaaatgtttgtttacaatattaaattattttgtaCATACCA
>XM_039824196.1
CAAGGTGACACAAAACAATCGCTGCAGTACCGGATGTGTGGAAGGGAGGATTTCTCCTCCAAATGAATTCCAGTTAAACTGTAATTTGTTCAGGGTCGGTGTTTGTTTTATGGCATACATTAATACGTCTGCAATAAGCTAATGACCACTGTTTGGTCGTAGTTAACATGATGTTCAACCCATTAGCCGGGTTACCAGAGGATCGAAAATCCATGTACAGTCAGTCACAAAACAGCGTGTACAAAACTGGCGATAAAACCAGCCCTATTAGCGTCATATTGGTTACCTCTGGCAGCCGAGGGAACAAACTACTTTTTCGATACCCTTTTCAAAGATTGGCTGAATGTCCGTCATCTCTTACAGCAAAACAACGGAGTCCATATGCTCTGAACACAACTGGGGATGGTCTTGAAGATCAGGATGGTGATTCAAGGTTCTCTGACATCATCCTCGCCACCATTCTGGCCACCAAATCAGATATATGTGGAAAGAAGTTTGAACTGAAGATAGACAATGTTCGATTTGTGGGTCACCCTACTCTCCTTCAGCATCCTCCTATCATTCcgGTTTCTAAGACAGATCCTTCACCTAAGAGAGAAATGCCTACGATGATCTTGTTTAATGTGGTGTTTGCACTAAGGgcaaatgctgacccatctgtCATCAGCTGCATGCACAACTTGTCACGTCGCATCGCCATAGCCCTTCAGCACGAGGAACGACGCTGCCAGTACCTGACCAGAGAGGCCAAACTGATGCTGGCCGTCCAGGATGAGATAACCACTATGACTGAGACGGATGGAAGCCCCCAGTCTCCATTTAGACAAATTCTTCCCAAATGTAAACTAGCCAGGGACCTGAAGGAGGCTTATGACAGCCTTTGTACAACTGGCGTGGTGCGGCTACATATTAACAACTGGCTTGAGGTGAGCTTCTGTTTACCACACAAGATCCACAGGATTGGCGGCAACTATATCCCCCCTGAGGCATTAGAGCGCAGCCTTAAGGCTATAAGACCCTATcatgctctgctgctgctggaaagtGAGAAGGCACTGCTGGGCCAGCTTCCACTGGACTGCTCACCTGCGATGGTGCGCCTCATCAAAACCTGCTCAGCGGTGAAAAACCTGCAGCAGCTCTCACAGGATGCTGACCTGGCCTTACTTCAGATCTTTCAAATTGCTGCTCACTTGGTTTATTGGGGCAAAGCGATCATCATATACCCACTGTGTGAGAACAACGTCTACATGCTGTCCCCTCATGCCAACATCTGCCTATACTCACCACTGGCTGAGCAGTTTGCCCAGCAGTTTCATGGTCATGATCTGCCCTCCATGTTAGCCAAGTTCTCACTGCCTGTCTCACTGGCCGAGTTCAGAAACCCTCTGGAAGCTCCTGCACAGGAGGCCCAGCTGATCCAGATGGTTGTGTGGATGCTCCAGCGGCGCCTGCTGATCCAGCTGCACACGTATGTCTGCCTGTTAGTGCCGCCCAGCGAGGATGAACCCGGGTTGAGGGATGAAGACCCTCCACTGGCTGCCCGTGTAGGAGGCCGCAGTCTCAGCACCCCTAGCGCTCTAAGCTTCGGTTCCCCAACCAGCAGTGATGACATGACCCTCACCAGTCCCAGTATGGACAACTCTAGTGCAGAGCTACTGCCTGGTGGGGACTCTCCGCTTAACAAGAGGATGACCGAGACGCTACTTGCCAGCCTGTCAGAGCACGAGAGGCAGGTTATTCTTAACATCCCTGCGGCACAAAATCCAGAGGATCTTCGGATGTTTGCCAGGCTGCTGCACTATTTCAGGGGACATCACCACCTGGAAGAGATTATGTACAATGAGAACATGAGGCGCTCGCAGCTCAAGACGCTGTTTGACAAGTTCCGCAGTGTCCTTGTGGTGACCAACCATGAGGATCCCATTATTTCCATCTTTCAGTCACCCATGGAGTAGAGGCACAGAGACGGTATCAGCTCTCACAAACTGGAAAATATGTCTGTTTGAGAGGAGTTAATAGCCTGCAGTGCTCACAGCTAAGTGCTATTGCTCAACGGTGTTTTAATGTGAACTGACAGGATTGTGTTAATGAGTGCAGatttacaaaatgaataaaGTGTTTGTCCTTTATGAgccaaatgtttgtttacaatattaaattattttgtaCATACCA

Function

symbol description
nprl3 Predicted to be involved in several processes, including TORC1 signaling; cellular response to amino acid starvation; and negative regulation of TOR signaling. Predicted to be part of GATOR1 complex. Human ortholog(s) of this gene implicated in focal epilepsy. Orthologous to human NPRL3 (NPR3 like, GATOR1 complex subunit).

NR:

description
PREDICTED: nitrogen permease regulator 3-like protein isoform X1

GO: NA

KEGG:

id description
K20406 NPRL3; nitrogen permease regulator 3-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824193.1 True 2256 mRNA 0.49 15 16944603 16961165
XM_039824194.1 False 2217 mRNA 0.49 14 16944603 16961165
XM_039824195.1 False 2217 mRNA 0.49 14 16944603 16961165
XM_039824196.1 False 2178 mRNA 0.49 13 16944603 16961165

Neighbor

gene id symbol gene type direction distance location
LOC120574106 hbz,LOC103143760,LOC106958385,LOC108440248,LOC107378371,LOC103468712 coding upstream 7766 16935916 ~ 16936837 (+)
LOC120575003 NA coding upstream 16527 16927114 ~ 16928076 (+)
LOC120575002 NA coding upstream 20475 16923161 ~ 16924128 (+)
LOC120574999 NA coding upstream 24817 16918946 ~ 16919786 (+)
kank2 kank2,LOC104918682 coding upstream 29753 16898592 ~ 16914850 (+)
rhbdf1a rhbdf1 coding downstream 12913 16974078 ~ 17003265 (+)
cdip1 cdip1,LOC103374307 coding downstream 66170 17027335 ~ 17032983 (+)
snrnp25 snrnp25 coding downstream 74082 17035247 ~ 17037747 (+)
shisa9b LOC103368695 coding downstream 129254 17090419 ~ 17106922 (+)
igfals igfals coding downstream 171584 17132749 ~ 17135626 (+)
G155684 LOC100174873,LOC107596828,LOC107703325 non-coding upstream 4348 16929371 ~ 16940255 (+)
G155688 LOC100174873 non-coding upstream 12369 16925063 ~ 16932234 (+)
G155677 NA non-coding upstream 104309 16838923 ~ 16840294 (+)
G155616 NA non-coding upstream 221940 16718176 ~ 16722663 (+)
G155602 NA non-coding upstream 291090 16652933 ~ 16653513 (+)
G155743 NA non-coding downstream 51253 17012418 ~ 17016352 (+)
G155788 NA non-coding downstream 156454 17117619 ~ 17118031 (+)
G155807 unkl,LOC106934033 non-coding downstream 200017 17161182 ~ 17162203 (+)
LOC120575351 NA non-coding downstream 240853 17202018 ~ 17203417 (+)
LOC120575242 NA non-coding downstream 254960 17216125 ~ 17231676 (+)
raver1 NA other upstream 175362 16757645 ~ 16769241 (+)
cmc4 NA other upstream 210259 16733456 ~ 16734344 (+)
olfm2a olfm2,LOC104918560,LOC107378344,LOC100706999 other upstream 380606 16520982 ~ 16563997 (+)
col5a3a col5a3,LOC104952480,LOC102201017,LOC101485068,LOC102299321,LOC100695815,LOC107378343,LOC108243746 other upstream 442899 16451233 ~ 16501704 (+)
camsap3 NA other upstream 557081 16315832 ~ 16387522 (+)
usp31 usp31,LOC103368689,LOC101484509,LOC102212874 other downstream 311494 17272659 ~ 17292266 (+)
hs3st4 hs3st4,LOC100711185 other downstream 453410 17414575 ~ 17503644 (+)
rmi2 rmi2,LOC102793083 other downstream 755574 17716739 ~ 17724229 (+)
pla2g10 LOC104918718,LOC100698203,LOC102215607,LOC101486881,LOC102793376,LOC102313624,LOC103360505,LOC105922122 other downstream 775814 17736979 ~ 17741144 (+)
axin1 axin1,LOC104966034,LOC107564695 other downstream 789712 17750877 ~ 17791408 (+)

Expression


Co-expression Network