LOC120574171 (wbp11)


Basic Information

Item Value
gene id LOC120574171
gene name wbp11
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4314794 ~ 4324641 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824373.1
ATGACGTCGAATTAGCCTCGTTCTCGCGTCCGCTCGTGCTCGCGGCAGTAAACATGGCGACCGGCTAACGAAGCCTTTTCTTGTATTCCATCCTGAAGCCTTTTTAATTTCTCTCCCAGTGCGTTCGCAATACGTCttactttatttttctgttAACGCAGAGGTGCGTTTGTAGAGCGTTACGCTCTGCGGGTTTTACTTGGATAAAAGGGTGAAGGAGACGCACCGGCACAATGGGGCGACGTTCAACCTCCTCCACCAAGAGTGGGAAGTTTATGAACCCCACCGACCAGGCCAGAAAGGAGGCCAGGAAAAGAGAGTTGAAAAAGAACAAGAAGCAGAGAATGATGGTGAGAGCAGCGGTGCTCAAGATGAAGGATCCCAGGCAGATCATCAGGGACATGGAGAAGCTGGATGAGATGGAGTTTAACCCAGTTCAGCAGCCCTTGCTGAATGAGAAAGTGTTGAGGGACAAGAGGAAGAAGCTACGCGAGACATTTGAGCGCATTGTCCGTCTGTACGAGAGAGAGAATCCCGACACATACAAGGAGCTACGCAAACTGGAATTGGACTATGAGACCAAACGAGGGCAGCTGGCTCTATATTTTGACTCAGTCaagAATGCAGAGTCTGTGGAGGTCGACAGTATCCCTTTACCAGATATGCCTCATGCCCCCTCCAACATCCACATCCAGGACATCCCACTCCCAGGAGCTCAGCCTCCCTCCATACTGAAGAAGAACACCTCTTTTGGTAAAGGACCTCTTTCGGCATCTTCTGGACCCGTTTTGCCGACAGTGCCAGCTGTGCCACGTTTACCTCCAGGGAAGAAGCCCCCTGGCCCCCCACCTGGGCCCCCCCCTCCACAGGTCCTGGCACTGTACGGCATTCTTGCTCGACGAGCTAACAGCAtggacacagAGCCTTCCATTCCTGGCTTAGACAAGGACTCTGCAATGAAGTTGGGAAGAGATCGGGATAGCGGCAGTGAGAGCGACAGAGATCGGGATGATCTGGACGACGACGAAAGCGACTCTGAGGAGGACAGCGAAGAAGAAAGAGATGAGGGAGACGGTGACCAGAGAATGAGTGTGGACAGGCAGGATGATGAGAGggaaagggaggaggagagagaccgAAATGAAAGAAATGCTGGTCGTAGTGTACGTTTTGCGGACATGCCTCCAGAGGCACCCCGTGAcggaaagaggaagaaaaagagggtGGTGAAGAAGACCAAGGCCATTACCCCTCTGCAGGCCATGATGTTAAGGATGGCAGGTCAGTCCATTCCTGAAgacgaggaagaagaagaggtagAGGAGGAATACACAGATGAATCAGACAGCTCAGACATCGAGGACAGGGGACCACCAGGGGAAAACCAGCCCCACCTGATGGCTAATCAGCGTCTACCCCCTCCTGCTGGGCCAGGGGGACAGCAAGGGCCTCCACACTTGCAAGGTCCACCGATGACTGGCCCCCCACCACTGGGCCCTCCCCCTGCTCCTCCCATGAGACCTCCTGGCCCACCCTCTGGCCCGCCTCCAGGCCCACCACCAGGTGCTCCTCCGTTCCTGAGGCCTCCTGGTATGCCTGGAGGCATGAGGGGTCCAATGCCTCGTCTTCTGCCTCCTGGACCTCCGCCAGGTCGGCCCCCAGGCCCCCCACCAGGCCCCCCTCCTGGCCTCCCGCCAGGCCCCCCACCACGAGGACCCCCTCCCAGACTTCCACCCCCAGCAccaccagGtatcccccctcctcccccaagAGCAGGAGGGCCCCCACGTCCACTTGCCCCACCACTTTCCCTCTTTCCTCCACCTCTCAACTCCAACGTGCTCAGTGCTCCTCCCAACATTGTCCAGCGACAAAAAGGCTCGGGATCCAACCAGGATGGTCCACAGAGCAACATGCCGCCCCCCGCCATGCCCATGTCCATGCGACAGGGCGTCATGCAGATGCCTCCTCCCCCAGGGACGGCCGCCCCCTCCTCAGGGGGCAACCCTCCCAGCCACCACCACGCAGCCACCATCGAAAAGCGACCCAACATCACCTCTGTCGCAGCAGCCGGAGGCGGCCTGGCAGCGGGCGCTGGCTCTGGGGGGGCCACTATCTCGGCCAAACCTCAGATCATCAATCCAAAGACGGAGGTCACCCGCTTCGTGCCCACAGCGCTGAGGGTGCGGAGGGACAAAGGAGGAGCGATGCCCGGGGCAGCACCGGGGCCAATGGAGAAGGGACGGGGTGGTGTCGGAGGAAGGAGGGGAGATGAAGGCATGGGAGGGGGACAGGGGCAGAAACAGCAGTCGGCAGCTTCCCCGATGGGTTTGGTCCACCAAACGCAGATGGGTGCTGTGTCTCAGCCCAACATGAAGACTAAGGACCAGATGTATGAAGCCTTTATGAGGGAGATGGAAGGGCTCCTCTGAGACTCGAGAGGGAATTCGGAGCAGATGTTCAGTGGGGCGTTCTAAACAAaaggagtgtatttgttttctgtgcaGAGTTCTATAGGTAGCTGTGTTCAAGACAGTCGACTAGATCAGTTTCTCTTTAGTAAGGGATGGCTGCCACACCCAGCACTGGTCTCAACAGGTTCATTTTCATTTGATCTGGACTTTTATTTGTTGTATCAAAGAGAATGTGAATTTGATGTACGTAAAGATTGGTTGCTATGAGGAGGCaactcattaaaaaaataacgctataaaaagtttttttgccAGAGACaacccaagtttttttttttttttgtcctccagtatgttcttttttccctttttaactGCGTTTTTCCTCCGGCCAACTATTTGTGATTTACCATGAccaaaaaaagcattttgtATGATTATTTTATCGGTGATCTCCATCTCCTAAACATGTTGGACATCAAAATAAAGTTGTGGAAAGTCAACCACTGACAATATACATGTCTGAAACTGTTTGATCTGCAgctaaataaatactttttacCTCA

Function

symbol description
wbp11 Predicted to be involved in mRNA cis splicing, via spliceosome. Predicted to act upstream of or within RNA splicing; mRNA processing; and rRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of spliceosomal complex. Orthologous to human WBP11 (WW domain binding protein 11).

NR:

description
PREDICTED: WW domain-binding protein 11

GO: NA

KEGG:

id description
K12866 WBP11, NPWBP; WW domain-binding protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824373.1 True 2980 mRNA 0.54 13 4314794 4324641

Neighbor

gene id symbol gene type direction distance location
ddx47 ddx47,LOC102790298 coding downstream 458 4305836 ~ 4314336 (-)
LOC120574358 LOC102302242,LOC108236130,LOC103143665,LOC107376256,LOC103468406,LOC101471213,LOC105929903 coding downstream 11135 4215833 ~ 4303659 (-)
LOC120573799 aanat1b,LOC104938975,LOC106934060,LOC102233098,LOC106937025,LOC103468403,LOC105929941,LOC107104616 coding downstream 100699 4211146 ~ 4214095 (-)
trnas-aga_11 NA coding downstream 284534 4030179 ~ 4030260 (-)
mchr1b LOC103359996,LOC101467517,LOC102311886,LOC100690541,LOC102197681 coding downstream 342396 3969793 ~ 3972398 (-)
LOC120573904 NA coding upstream 23331 4347972 ~ 4351094 (-)
LOC120574889 bglap coding upstream 31044 4355685 ~ 4358977 (-)
LOC120574253 NA coding upstream 168943 4493584 ~ 4505527 (-)
LOC120573943 gsg1 coding upstream 203811 4528452 ~ 4539716 (-)
tcf20 tcf20 coding upstream 217649 4542290 ~ 4560444 (-)
G151691 NA non-coding downstream 46140 4268330 ~ 4268654 (-)
G151639 LOC103360002,LOC100712452,LOC105013158,LOC102214151,LOC101470166,LOC106937022,LOC103143670 non-coding downstream 149296 4130804 ~ 4165498 (-)
G151615 NA non-coding downstream 202605 4055214 ~ 4112189 (-)
G151633 NA non-coding downstream 231113 4082918 ~ 4083681 (-)
G151561 NA non-coding downstream 350383 3964048 ~ 3964411 (-)
LOC120574176 NA non-coding upstream 9631 4334272 ~ 4337224 (-)
G151783 NA non-coding upstream 86875 4411516 ~ 4413160 (-)
G151785 NA non-coding upstream 152743 4477384 ~ 4478879 (-)
G151790 NA non-coding upstream 194140 4518781 ~ 4523574 (-)
G151799 NA non-coding upstream 258563 4583204 ~ 4584160 (-)
G151344 smarca4 other downstream 997879 3311727 ~ 3316915 (-)
G151227 LOC103393680 other downstream 1399427 2911326 ~ 2915367 (-)
G151216 LOC106957010,LOC107376217,LOC103393680 other downstream 1418451 2873918 ~ 2896343 (-)
G151146 NA other downstream 1509383 2399809 ~ 2805411 (-)
farsa farsa other downstream 2153070 2132732 ~ 2161724 (-)
LOC120575464 NA other upstream 37207 4361848 ~ 4367343 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other upstream 91536 4416177 ~ 4464991 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other upstream 260532 4585173 ~ 4765493 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other upstream 853675 5178316 ~ 5227241 (-)
G152114 rbx1 other upstream 1137205 5461846 ~ 5464418 (-)

Expression


Co-expression Network