LOC120574228 (LOC102295563,LOC103366689,LOC100703873,LOC102207615)


Basic Information

Item Value
gene id LOC120574228
gene name LOC102295563,LOC103366689,LOC100703873,LOC102207615
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 24762190 ~ 24800304 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824470.1
atgaACGGTAACCCGTGTGCCCGCAGGCTGGCCCGGCGCTCCAAATCCGCCCTGCTGATCGCCGCTCTTGCCGTCCTGCTGGTCCAGACTCTCATCGTGTGGAACTTCAGCAGCCTGGACTCTGCCAACGGGGACGGAGGCGCCAGGAAccgggagaagagagaggaccGATCCGGGGGGCTCAACAAAGCCGACAGGGAGCAACCGCGAAGGGGGCTGCAGAAGAAGGGCGACCCGCCGCCCTCGCTCGGAAAGGCGGCCGTTCGGCACAAGCTGCAGGCGGATGCCTACCATTCCCACCGGCCCAAAGAGAAGCTTCACCTGGACAGCAACAACAATGAGAATTCGGTCCCTAAAGACTTTGACACCATCGACAGCAACAGCAACCTGGGGGCTCGATCTCAACGCCAGCGTGTGCCGGTCGCAAACCCAAAACGCAAGCTGGATAAGGCCCAGCCACAGAGCATGCTGGGAAAATCTGCTAACGAGGTCCTCAAGTACGCTCCCATCCAACCCAGAGGGGTGGGCCACAATCACAACCGCACCCACGTCCGTAAAGCCCATCCCCAGGTTCCAACCGTCCAAGCACAGGTCCAGGGGTCCAATCAGGATCCACCGTTCTACCAGGCGAAGATGTCGGCCTCGCAGCTGCCGCCCAGTTTGGAGCCGAGAAAGGAGCAGCCGCAGTGTGAGATCAGCGGAAAGGAAGCCATTTCTGCTCTGTCCCGAGCCAAGAGCCGCGAGTGTCGGCTGCAGATAGTGGAGGTCTACtgcaaacacaaagacagagcgCTGATGCCTGAGAAAGTGCCTCGCTACTGCCCCATAGAAGGTAAGGCTAATGTGAATGTACAGTGGGAGGAGGACCCCTCAGAGGCTGCCCGGCTGGTGCGGGCACGGATCGCCTTCGTCCTGGTCATCCACGGCCGAGCCTCGCGTCAGTTCCAGCGCCTCTTCAAAGCCATCTACCACACCTCGCACTACTACTACATCCATGTAGACCAGAGGTCGAACTACCTCTACAGAGAGGTTCTGACTTGGGCCGGCCAGTATCCCAACGTCCGGGTGACTTCCTGGCGGATGTCCACCATCTGGGGTGGGGCCAGCCTATTGACTATGTACCTTCGCAGCATGGAGGACCTTCTTAAAATGTCTGACTGGTCCTGGGACTTCTTTATCAACCTCAGCGCTGCAGACTACCCCATCAGGACCAATGAACAGCTGGTGGCTTTCCTGTCCAAGTACCGCAACATGAACTTCATCAAATCTCATGGCAGAGACAACGCACGTTTCATCCGTAAACAGGGTCTGGACCGTCTCTTTTACGAGTGTGACACCCACATGTGGCGTCTTGGGGACCGCAAGATCCCAGAGGGCATTGCGGTGGACGGAGGCTCTGATTGGTTCCTGCTCAACCGGCCCTTTGTGGACTATGTGGTCAACTCCCGAGACGAGCTGGTCAGCAGCATGAAGCGCTTCTACACCTACACACTGCTGCCTGctgagTCATTTTTCCACACTGTGTTGGAGAACAGTGCCCACTGTGAGACCATGGTGGACAACAACTTGAGGCTTACCAACTGGAACCGCAAACTGGGATGTAAATGCCAGTACAAGCATATTGTGGACTGGTGTGGCTGCTCACCCAACGACTTCAAGCCCTCGGATCTGCCACGCTTCCAGCAAGCGTCCAGACCCACCTTCTTTGCCAGGAAGTTTGAGGCCAGCGTCAGTCAGGAGATCATCAACCAGCTGGACTCCTACCTGTTTGGACCGTACCCCCCAGGCACCCCGGGCCTTCAAGCCTACTGGGAAAACATCTATGAGCAGGAGACGGACGGCCCCGCCAGCCTATCAGACTCCACGCTCAGCCACTACCACGCCTTCGCTCGCATGGGACTGTCCCGCGCTGCCAGCTCGCTGCAGGGACATCCCAATGACAACAGCTGCAGGTACATGGCTATGAGCCACCCAGTGTCGGTCCACCTCTACTTCCTGTCAGACCAGTTTCAAGGCTACCTAGTGCGTCATGTGGCCACTAACCAAGCCTCCACTCAACTGGAAAGCTTGGAGACCTGGGTGACTTCCAAAGACCACTTCACCCTGGCCAGCCCCCCCAACCCTACCAACAGGCTACAGCACATccagGTTGGCGCGGACTGGGATCCTAAGGAGCGTCTCTTCAGGAACTGGGGGGGTCTGCTGGGGCCCAAGGACGAGCCGGTGGCCGTGCAGCGTTGGAGCCGAAGCCAGAGCAACCTGACGGCTACTGTGGTGTGGATCGACCCCACCAACGTCATCGCTGCCACTTACGACATCCTGGTGGACGCCTCCGCTGAGGTCACCCACTACCGGCCGCCACTCACCCTGCCCTTGAGGCCCGGCTTGTGGATGCTGAGGGTGCTGCATCACTGGAACCCGCTGGGCCAGACCAGCTTCATCGTGGCTCCGCTGGAGTTCCACCGACAGCAGCCATTACAGCAAGAGGATGCCCTGCGGTTGCACGGTGGCCCAGCCAGAAATTCCTACATGGAGCAGAGTTTCCACGGCCTGAACCCGGTGCTTCGGCTGCCTGTGAGTCTGGGCGCCGTGGAGGAGGCTGAGGCCAACGCTGCCCTGACGGGGGTGCCGCTGCGCCGCTGGCTGGACTGGCTGCTGGAGGGCCACTGGTCGGCCGCAGACGTCTGCTCGATGGGACCCAGCGCCTGTCCCGTCATGCAGCGCTGTCGTCTTACCGTCTGGAGCGCCGCCAGCCCCGACAGAAAGTCTGATCTGACCCCGCCCAGAGAGGACGGACGGATCAGGTAGCAGACGGACAGGCTGAGGGAGGACAAGAggaacaaatgaaggaagacatGGGGCTGATGTCCTGTTTGTgtcttatatttatttatttaaagtttgtGCAACATCAGAGTGAAAGGAAATGGATGAATGAAACTTTGGAGGCAGTGACAGGAAGAAGAGGAACAAACTCAGAACACTGAGAAACAAATCTTCAATCCTTATTCAGTTTGCtgctcaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgttgtgtgtgtgtgtgtgtgtgtgtttacctcttGTTTGTGAGTGTTACCCTAGGTTATGGTATGCAAGTGAGTTTACATGTCCAGATGCTTAAAAACGGACGTAATTGCTCATTCTTAGGCCATTATTGCTCACAACTTAGTGCACAATTTCCTGAGAGAAATTGTTTTATAGtgatcatatttatttatttttatttcagactGTTATTCCCAGATTACAATTGTAGTCAAAAGATTGAAAGATTTAAAATGCAACTTCCTAGAAATGAACACTGATCCTAGAAAATAAATACTGATTTAGTTTCCCATagaaggttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaggtgaagCTAAAATGTAATTGGTCGATGCTGTAAGGGAACTCAGTGAAGACAGAAGCTTgcattctttttaaaatattaattaaaagTCAACAGTTAATGCTTTga

Function

NR:

description
PREDICTED: xylosyltransferase 1-like

GO:

id name namespace
GO:0006024 glycosaminoglycan biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0030158 protein xylosyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00771 XYLT; protein xylosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824470.1 True 3643 mRNA 0.55 11 24762190 24800304

Neighbor

gene id symbol gene type direction distance location
LOC120575207 NA coding upstream 1185 24739548 ~ 24761005 (+)
LOC120573927 NA coding upstream 31741 24726726 ~ 24730449 (+)
pigq pigq coding upstream 63258 24679566 ~ 24698932 (+)
alg1 alg1 coding upstream 88249 24666071 ~ 24673941 (+)
flr LOC100700268,LOC102298840,LOC102210258,LOC101469664,LOC103366697,LOC104923377 coding upstream 106354 24640262 ~ 24655836 (+)
arl6ip1 arl6ip1 coding downstream 93727 24894031 ~ 24900778 (+)
fus LOC103040960,LOC101075112 coding downstream 116364 24916668 ~ 24934552 (+)
LOC120575218 NA coding downstream 160514 24960818 ~ 24983874 (+)
LOC120575217 NA coding downstream 209645 25009949 ~ 25024600 (+)
LOC120575275 NA coding downstream 316775 25117079 ~ 25135922 (+)
G157764 NA non-coding upstream 97301 24664676 ~ 24664889 (+)
G157763 NA non-coding upstream 100000 24661368 ~ 24662190 (+)
G157762 NA non-coding upstream 101296 24660572 ~ 24660894 (+)
G157704 si:ch211-76l23.4,LOC102076996,LOC108256336 non-coding upstream 125080 24628667 ~ 24637110 (+)
G157697 NA non-coding upstream 237876 24516373 ~ 24524314 (+)
G157779 NA non-coding downstream 26 24800330 ~ 24805113 (+)
G157833 anapc2 non-coding downstream 28282 24828586 ~ 24830003 (+)
G157831 LOC108427354,LOC107729502,LOC107658507,LOC107583079 non-coding downstream 60714 24861018 ~ 24863732 (+)
G157838 NA non-coding downstream 67072 24867376 ~ 24870866 (+)
G157854 NA non-coding downstream 71659 24871963 ~ 24875187 (+)
rab40c rab40c,LOC103366693,LOC107690266,LOC107567894,LOC107685905,LOC107590575,LOC103393433 other upstream 38320 24702819 ~ 24723870 (+)
grin2ca LOC103366762 other upstream 624607 24053726 ~ 24137583 (+)
G157468 NA other upstream 1862419 22896406 ~ 22899771 (+)
LOC120574981 NA other upstream 2215804 22540849 ~ 22546386 (+)
lrrc4ba lrrc4b other upstream 2666679 22063070 ~ 22095511 (+)
LOC120574235 anapc2 other downstream 52234 24852538 ~ 24859772 (+)
LOC120575219 NA other downstream 282977 25083281 ~ 25102511 (+)
srsf2b LOC104946423,LOC101476251,LOC100695205 other downstream 397344 25197648 ~ 25202835 (+)
G158004 NA other downstream 530131 25330435 ~ 25367712 (+)
zgc:158403 LOC103370216,LOC106932766 other downstream 583060 25383364 ~ 25403052 (+)

Expression


Co-expression Network