gipc1 (gipc1,LOC106529657)


Basic Information

Item Value
gene id gipc1
gene name gipc1,LOC106529657
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15732662 ~ 15737461 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824910.1
caccgGAACGTGAACTGGGGGTTTCTTATATGTCTATGGGGTTTACGAGGAAACCTGAACGCATCAGTGTTTCACCCCTGCTGGGCATAAATCAACAGCAGACAGAGACGGGATTTACCTACAATCTACCCAGGCCAAGTCGACCTGTCAGGAGCAGCAAAACATATTGGACTTTCGCTGCAAGCGCATATATTTTGACAACTCACAGCAGCACCGTTAGCAGGCTAAGCTAGCAGGAAGAGCTGCCGGCAGTTGGCTAAAACTTAACGTTACTCCGGCTGGAGACCACCCACTGCAGGCTGCTGGACTTGACAGATCCAGCTATGTAAGCTGCTCTGATGTGTGGACTTCACATCCATTCAGCGCCTGGTTGAGACAGCTTTCAAACTGGTCTGGATGACCACACTATAACGCTGACATAAACATCCAACAGACCTGCAGCTCATTTTGCTGAACAGGTGTATGTTGGACTGGATTGTAGCATAACTCCCCAGAGCaacctcctccctcccttccctttGCTCTCCCTCTAGCACTACTATGCCTCTGGGTTTGGGAAGAAGGAAGAAGGCGTCTCCGTTAGTGGAGAACGAGGAAGCGGAGCCTATCCGAGCAGGTCTCAATGTGCCAGGTATGGATGGCCTAGATGGAGGTGTTGTCGGGCTGGGAGAAAGTGCCACCTCTGAAGGTCTGCCGCCTCCACCCAGCAGCATGCGACCTCGCCTCATCTTCCACACTCAGCTTGCTCATGGCAGCCCCACTGGCCGCATTGAGGGCTTCAGTAATGTGCGGGAGCTCTATGCCAAAATTGGTGAGGCTTTTGGAATACCGCCATCTGAGGTTATGTTTTGCACACTGAACACTCACAAGGTGGACATGGATAAGCTGTTGGGAGGCCAGATTGGGCTAGAGGACTTTATTTTTGCCCACATTAAAGGACAGCGAAAGGAAATAGAGGTGTTCAAAGGAGAGGATGCACTGGGTTTGACGATCACTGATAATGGAGCTGGCTATGCTTTCATCAAGaGAATACGCGAGGGGAGCGTCATCCACCAGATACAGGTCATCAACGTGGGTGATATGATCGAGTCGATCAACGGCCATCGCCTGATTGGGTGTCGACACTATGAGGTGGCCAAGATGCTAAAGGAGCTGCCTAAAGGGAAGGAGTTCACGATCAAGCTGGTGGAGCCTCTCAAGGCCTTTGATATGATCGGCCAGCGGTCTGGAGGGTCAAGGTCAGCATCAGGGGTTCAGCTGGGGACCGGCAGAGGAACTCTACGGCTACGCTCTAAAGGTCCTGCTACTGTGGAGGAGCTGCCCTCTGCATTTGAGGAAAAGGCCATTGAGAAGGTGGATGACCTGCTTGAGAGCTACATGGGAATCAGAGACAGCGAGCTAGCGGCTACCATGGTGGAGCTGGGAAAGGACAAAAAGAACCCTGATGAGTTTGCCGAGGCTTTAGATGAAACCCTCGGGGACTTTGCCTTCCCAGACGAATTTGTTTTTGACGTCTGGGGTGCCATCGGCGATGCTAAGGTTGGCCGAGTGTAACCACAAAAAGTAACAGCGCAGACCAACTGTTTGCATGACCCCCCCACAACGTTCAGCACTACTAGGAAACACAACACTACCGTCATGAGTTTGTTTTAATTCCAGTGTATACtgctattatttttaatttagagtGTACCCTTTTGGGAGACTGCCTAGACAAAGAGAATAATGGCAGTTagtggaagaagaaaaaggtgacTCTGATGACTTCCCAAGTGCTTTTATTTGTcttccagctttttttttttcttccagaaaCTACAAGCACGCTGATGAGCATTCCCTTTGACCTGCATGTCATTGTTGTAGTTGCTGGCAGTGGAACAAATACAGCACAAGTCTCTAATATGGGAGAAATGAAAGACAACCGCTAATACAAAGTAAATCTTTGATActtaacaaacaaaatgtgatattttttttttctttccacatTGCACTATGTTGCACTGCGCTGTAAACCAACAACAGACGTGAACAGAGATTGCGCTGTACCTCACCCGGTGAGCGGCACAGTAGTTGCACATTACAAGGCATCGGCCTCCCTGAGTTAGTCTTGTCCTGAACCACTCGCTGTTACAGTTATGGATCCGTTTAACAAGCATGTGCTGTATCTCCTTAATgatttctgctgttttttttagtcTTTGTTATTTTGGGTAAAAAACGATTGTAGTCGCTAAAGGGTCATAGTAACATGTAGCTTGCTGACTAAACGATCAGTGGTGTTCGTTCACCTTTTAACACACTCCATGCTGTAATGAAGTTACCGGCAGGATATTCCAGTCTTACTTTCGTACATTTGACAGTGTTTCAGAGAATTGGTGACAATTGACCTTTTTCGGAAGGTGGGGATGAGAAGCAGATTGGGTTGTGGGTTGTGTTgtgtctttatatatatattttttttttatatcactaGTGTTTTTATATAAAGTGATGTGTTGTCTATTTTAAAACCGGGTTTGTGTAATGGATGGTTTTGATCTTGTGTTGCAACTACTTTATTTTGAAGCATTACAGAAGGCAGTATTAAACAAGAGAAAGTCATGAGATGGAGTAGTTGtgtaaaaaggaaaatgaaTCTGTTGAGAACAAAATGCCTTCATTTCTTCTCATTTCatgcattttatacatttttgttagtATGCATTCTGGTGCTGAAAAATCAAGTATCCTGTCATTGGCGCAAATACCAAACTACTTCCTTCACGTGTCACAGTGACTTGTGTTCATAGAGAGAGAAAACGGGCAATGCTGCACCAACTACTCTGCGGAGGTAAacttgtcttaaaaaaaaaaatgttttggtgtTAACCTTTTCAGTATATCCAAATGTATGAAGCTATTTTGTAGTTTTGTTTCATTCTTCAGAGTTAATGAATATCTAAATGTAATGAAACTGATGCTAGAACACTGTAACACTGAGAAGAACACATTATTTTGATGGCTTTGTATTACACTGTTGTCAATGTCCTATTATATTGCAATAATAACATTGACATGGCAGTC

Function

symbol description
gipc1 Enables MAP kinase activity. Acts upstream of or within with a positive effect on sprouting angiogenesis. Acts upstream of or within angiogenesis; artery morphogenesis; and lymphangiogenesis. Is expressed in dorsal aorta; neural tube; posterior cardinal vein; and somite. Orthologous to human GIPC1 (GIPC PDZ domain containing family member 1).

NR:

description
PREDICTED: PDZ domain-containing protein GIPC1

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0048844 artery morphogenesis biological_process
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004707 MAP kinase activity molecular_function

KEGG:

id description
K20056 GIPC, SEMCAP; PDZ domain-containing protein GIPC

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824910.1 True 3069 mRNA 0.45 7 15732662 15737461

Neighbor

gene id symbol gene type direction distance location
dnajb1a LOC104918593,LOC103367166,LOC104960307 coding upstream 2317 15726299 ~ 15730345 (+)
samd1a LOC104960309 coding upstream 14828 15705783 ~ 15717834 (+)
prkacaa prkaca,LOC104918597,LOC103367163,LOC100700452,LOC107378291,LOC101470440,LOC102230641,LOC107093417 coding upstream 29413 15682339 ~ 15703249 (+)
asf1ba LOC104960312,LOC106534676,LOC108241280,LOC102230375,LOC101069596,LOC102210765 coding upstream 50982 15675152 ~ 15681680 (+)
tubb4bl tubb4a,LOC103367161,LOC100712088,LOC103372938,LOC107711200 coding upstream 63275 15666386 ~ 15669387 (+)
trim35-12 LOC101076486 coding downstream 471 15737932 ~ 15741720 (+)
dnm2a dnm2,LOC102793658,LOC101473937,LOC102206614 coding downstream 59164 15796625 ~ 15834604 (+)
tnfsf14 NA coding downstream 98137 15835598 ~ 15844637 (+)
ppap2d LOC104918584,LOC104945815,LOC103364129,LOC101077623 coding downstream 118682 15856143 ~ 15872350 (+)
LOC120574506 NA coding downstream 329730 16067191 ~ 16077570 (+)
G155257 NA non-coding upstream 847 15661368 ~ 15731815 (+)
G155212 NA non-coding upstream 188113 15544242 ~ 15544549 (+)
G155197 LOC104918611,LOC104960327,LOC102777936,LOC100691075,LOC101487576 non-coding upstream 224343 15507053 ~ 15508319 (+)
G155180 metrnl non-coding upstream 283104 15446884 ~ 15449558 (+)
G155104 NA non-coding upstream 559299 15173092 ~ 15173363 (+)
G155346 NA non-coding downstream 153634 15891095 ~ 15892034 (+)
G155342 adgrl1,LOC103392844 non-coding downstream 156413 15893874 ~ 15900522 (+)
G155384 NA non-coding downstream 421190 16158651 ~ 16201112 (+)
G155393 NA non-coding downstream 479053 16216514 ~ 16241082 (+)
G155413 NA non-coding downstream 577305 16314766 ~ 16314974 (+)
rasd2 NA other upstream 204192 15526854 ~ 15528470 (+)
arl16 arl16 other upstream 219852 15510093 ~ 15512810 (+)
ndel1b ndel1,LOC104940291 other upstream 328057 15366920 ~ 15404605 (+)
G155088 NA other upstream 592956 15135791 ~ 15139706 (+)
LOC120575440 LOC102304323 other upstream 740154 14992013 ~ 14992508 (+)
LOC120574525 NA other downstream 149714 15887175 ~ 15891028 (+)
LOC120574544 pet100 other downstream 522223 16259684 ~ 16262058 (+)
camsap3 NA other downstream 578371 16315832 ~ 16387522 (+)
col5a3a col5a3,LOC104952480,LOC102201017,LOC101485068,LOC102299321,LOC100695815,LOC107378343,LOC108243746 other downstream 713772 16451233 ~ 16501704 (+)
olfm2a olfm2,LOC104918560,LOC107378344,LOC100706999 other downstream 783521 16520982 ~ 16563997 (+)

Expression


Co-expression Network