tubb4bl (tubb4a,LOC103367161,LOC100712088,LOC103372938,LOC107711200)


Basic Information

Item Value
gene id tubb4bl
gene name tubb4a,LOC103367161,LOC100712088,LOC103372938,LOC107711200
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15666386 ~ 15669387 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824887.1
GAAGGTCTTTATAGGCGGTGCCAAAGACTCCCGGACGATCGACTGCAGGAATCACCATCCTGTGAATCTCTGCTGCTCTGATTCCTATCTCCTACTCGACCACCCTTGTATCCATCTGTTACAAAAATGCGCGAAATTGTGCATTTGCAAGCCGGTCAGTGCGGAAACCAGATCGGAGCCAAGTTCTGGGAGGTGATCAGTGATGAGCATGGCATTGATCCCACTGGTGCCTACCACGGAGACAGTGATCTGCAGCTAGACAGAATCAGCGTCTATTACAATGAGGCCACAGGTGGAAAGTATGTGCCCCGAGCCATCCTGGTGGATCTGGAGCCTGGTACGATGGACTCAGTCAGGTCCGGTCCCTTCGGGCAGATCTTTAGACCCGACAACTTTGTCTTTGGTCAGAGTGGAGCTGGAAACAACTGGGCCAAGGGCCACTACACTGAGGGAGCCGAGCTGGTCGACTCTGTCCTGGATGTCGTGAGGAAAGAGGCCGAGAGCTGCGATTGCCTCCAGGGCTTCCAGCTCACTCACTCCCTAGGTGGCGGTACCGGCTCTGGCATGGGCACTCTTCTCATCAGCAAGATACGCGAGGAGTACCCTGACCGCATCATGAACACCTTCAGCGTGGTGCCTTCTCCCAAGGTGTCGGACACTGTGGTGGAGCCCTACAACGCCACTCTCTCTGTCCACCAGCTGgtagagaacacagatgagacCTACTGCATTGACAATGAAGCTCTCTATGATATCTGCTTCCGCACACTTAAACTCACCACCCCCACCTATGGAGATCTAAACCATTTGGTGTCCGCCACCATGAGCGGGGTGACCACATGTCTTCGTTTCCCCGGCCAGCTCAACGCTGACCTCCGTAAACTGGCTGTCAACATGGTGCCCTTCCCCCGTCTGCACTTCTTCATGCCAGGCTTTGCCCCCCTGACCAGCAGGGGCAGCCAGCAGTATCGCGCCCTGTCTGTGCCCGAGCTCACCCAGCAGATGTTCGACGCCAAGAACATGATGGCTGCCTGCGACCCACGGCACGGCCGCTACCTCACCGTGGCTGCGGTGTTCAGGGGCCGCATGTCCATGAAGGAGGTGGATGAGCAGATGTTGAATGTGCAGAACAAGAACAGCAGCTACTTCGTTGAATGGATCCCGAACAATGTGAAGACCGCCGTCTGTGACATCCCACCCCGTGGCCTCAAAATGGCTGCCACTTTTATCGGCAACAGCACGGCAATACAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTCACCGCCATGTTCCGCCGTAAGGCTTTCCTCCACTGGTACACTGGTGAGGGCATGGATGAGATGGAGTTCACAGAGGCAGAAAGCAACATGAATGACCTGGTGTCCGAGTACCAGCAGTACCAGGATGCCACCGCTGAGGAGGGCGAGtttgaggaagagggagaggaggaagttgCCTAAAACCTCAGCCTACCCAGCTGCCAAATCTCATTTTATCTCGCCCATCCCCCAATTCCATCCCTTCCATCTCTCTTCATCAGAAATTGAATGGTCTGCCACACTCTGAAAAACTGTCAACATCTAGATGACTGTTCCTCTAATGTTAGACATTGATGTGTATTTATACTGGTGACGTTTTtggttcatttgttttttttatgttgtgaaTGCACAGACTTATTGGCATCCTTACATCTGTCCTGTCATTGCCTTGTGGAAATTTAAAAGCAAGTGATTTTAACTGTAAAGCCTTGAATTTGTAGGATGaataaaatgtgattaaaaaggcCACTTTTACTGTC

Function

symbol description
tubb4a Enables calcium ion binding activity. Involved in negative regulation of microtubule polymerization. Located in axoneme and microtubule. Implicated in hypomyelinating leukodystrophy 6 and torsion dystonia 4.

NR:

description
PREDICTED: tubulin beta-4A chain

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824887.1 True 1802 mRNA 0.52 4 15666386 15669387

Neighbor

gene id symbol gene type direction distance location
LOC120574430 LOC104960337 coding upstream 5329 15660071 ~ 15661057 (+)
LOC120574823 NA coding upstream 96077 15567077 ~ 15570309 (+)
mrpl12 mrpl12 coding upstream 102983 15559318 ~ 15563403 (+)
hgs hgs coding upstream 109369 15545816 ~ 15557017 (+)
cldnk LOC106925874,LOC103468796,LOC106529779,LOC106946608 coding upstream 122519 15542947 ~ 15543867 (+)
asf1ba LOC104960312,LOC106534676,LOC108241280,LOC102230375,LOC101069596,LOC102210765 coding downstream 5765 15675152 ~ 15681680 (+)
prkacaa prkaca,LOC104918597,LOC103367163,LOC100700452,LOC107378291,LOC101470440,LOC102230641,LOC107093417 coding downstream 12952 15682339 ~ 15703249 (+)
samd1a LOC104960309 coding downstream 36396 15705783 ~ 15717834 (+)
dnajb1a LOC104918593,LOC103367166,LOC104960307 coding downstream 56912 15726299 ~ 15730345 (+)
gipc1 gipc1,LOC106529657 coding downstream 63275 15732662 ~ 15737461 (+)
G155212 NA non-coding upstream 121837 15544242 ~ 15544549 (+)
G155197 LOC104918611,LOC104960327,LOC102777936,LOC100691075,LOC101487576 non-coding upstream 158067 15507053 ~ 15508319 (+)
G155180 metrnl non-coding upstream 216828 15446884 ~ 15449558 (+)
G155104 NA non-coding upstream 493023 15173092 ~ 15173363 (+)
G155077 NA non-coding upstream 550938 15055351 ~ 15115448 (+)
G155346 NA non-coding downstream 221708 15891095 ~ 15892034 (+)
G155342 adgrl1,LOC103392844 non-coding downstream 224487 15893874 ~ 15900522 (+)
G155384 NA non-coding downstream 489264 16158651 ~ 16201112 (+)
G155393 NA non-coding downstream 547127 16216514 ~ 16241082 (+)
G155413 NA non-coding downstream 645379 16314766 ~ 16314974 (+)
rasd2 NA other upstream 137916 15526854 ~ 15528470 (+)
arl16 arl16 other upstream 153576 15510093 ~ 15512810 (+)
ndel1b ndel1,LOC104940291 other upstream 261781 15366920 ~ 15404605 (+)
G155088 NA other upstream 526680 15135791 ~ 15139706 (+)
LOC120575440 LOC102304323 other upstream 673878 14992013 ~ 14992508 (+)
LOC120574525 NA other downstream 217788 15887175 ~ 15891028 (+)
LOC120574544 pet100 other downstream 590297 16259684 ~ 16262058 (+)
camsap3 NA other downstream 646445 16315832 ~ 16387522 (+)
col5a3a col5a3,LOC104952480,LOC102201017,LOC101485068,LOC102299321,LOC100695815,LOC107378343,LOC108243746 other downstream 781846 16451233 ~ 16501704 (+)
olfm2a olfm2,LOC104918560,LOC107378344,LOC100706999 other downstream 851595 16520982 ~ 16563997 (+)

Expression


Co-expression Network