samd1a (LOC104960309)


Basic Information

Item Value
gene id samd1a
gene name LOC104960309
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15705783 ~ 15717834 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824892.1
AACTCCTCTCGAGTGAAACTTTTCGCTGCAACTCCGTCGGTCCACCTTAAGCGCACACGCAAACGCAGGAGGCGTACAGTGAGGTTTCCGCTTCTCAGTTGGGCTCGGACCGCGGCTCGCGAAAAACACCGTGTGTAACGTACAAGGTTGACGCACTAAGGTAGAAAaaaaggcaagaaaaaaaagcGAATCAACCGAGCAAAAAAGATGTCCGAATCTAAGTACCGCGAGTGGATCCTGGACACTATCGACTCGCTCCGGTCGCGAAAAGCCCGGCCGGACTTGGAGAGAATTTGCCGAATGGTCCGGAGACGACACGGGTCCGAGCCCGACCGAACCTGCGCAGAACTGGAGAAACTGATTCAAGAACAAACCGTGCTGAAAGTTAACTACAAGGGCTCTATTTCATACCGAAACGCCGCCAAGGTTCAGCGgagaagcagaaaaaaagacgaTGTAACGTTAACGACGGCTGCGAGAAGGAGCGCGGTGGAAGAAGCTAGTCATTCTGACTTGAGCAACGGGGACAGCGCTTTCGGTCCTGTTGACCAGGACGAGGAGGATTTGGAGGCTGACACATCTCTGGCAATGGACACAGACAGTAATGCAGATGAGGAGGGGGCTGATGAGAGCCGGGATGGGCAGGACAGATCCTCTCCTGGCCACACATATAAAGATGCCGCTGTGCACTGTGCCTCTGTGCGAGCCGCCTCTGCCCCCTGCTCCCCCTCTGGCACTCGCCCTGGCCCCGGCCCTGCCTCCGGTCTGGACTGTGCCTCTTTCCAGAAGGCTGGTGAGAGGCCCAGCTCCTTGCCCCCTTCCAGCCCCAGGGCCCTCACACACAATGACTGGGCCTATCATTCTACTGTCTGCCCAGCAGAGCGCCAGCACCCAGGAATGCAAAGAGACAAAGcagcagcagcagccatgaagCCAGCAATCCACTCTGCAACTACCAGCCCCTGCGCTTTAAAGAACAACATGAAGAAGGAAGATGAAGGCAAGGCGGTGGATAGTGGCCTTTCGTCTGACCAGTTAGTACCGGACTATGCAGCAGGGCTGGATGAGACCAGGAATGTATCTGATGGAAGACCACAGGCACTTTCTTTGCCATCTGACAACTGTACATTAAAGAACAAGATAGATATACCCTCCATCACAGCAGCCGAAGACAGTCTTCTGAATGGTGGTAAAGGGGATGAAGTctTTGTGAAGAAGGAGATGATGAGCCAGAACTTAATGCAGTGGACTGTGGCAGATGTGGCCAGTTACTTCTCAGCTGCGGGCTTTCCAGATCAGGCTGTGGCGTTTCGAACACAGGAGATTGACGGGAAGTCTCTTCTCctaatgcagcgcagtgacgtcTTGACTGGTTTGTCTATCAGACTCGGCCCTGCACTCAAAATCTATGAGCGCCATGTAAAGGTGCTGCAGAGGACCCACTTCTTGGAATATGAAGACCTCTGAACTGGTGCTTCacatgacagacagacaattcTGCATTGACCCAAACGTGAATGCAGTGCCCTCTCCCATCTAGGTCCTGCCACCCACCTTCATATACACAATATGTAGAGGGTGAGTGGGGGGAAAGACTGCGGTggaattaactttcactgtgaGAATGACCAGAAACTGAAAGACAGTCATCCTACCTCTCATTATGGTCTTTGGTTTTCAAATTGTTTTCGATTTACCCATGTGGCCGTTCGATTGCATTGTCAAGGGAATAGACTGGTACGTTCAGTATGTTTGAAAGTGGAGTTGCAATGACCTTTCTGCAAGAGTAAAAGATAGATAAGCAGCCATTGAAGGGGACTGAGCCTTGCACCAAGTGGACCACCCATGGGTTAATGTACCCACAGAGACATGTTGCACTGCATTGTGCTGCGAGCAAAGCGTTGTCACAGTTTTGGGTCCACAAGAGAATGTTGGTTTGGCAGTGGCTCTAAAATTTCAACCTGCATCCTCGCTCGATCTGTTATGGTACCTTTTGTTACTCCAGAAAGTCTTTGTAAGTCACACAGATAAACATAAAGCACATCTATTGGGAGTTTTCCTTTTGATTCCGTTAAATGAAATGTTATCAAAGTGCTGGGGAAGTCAGATGCCTGACCCATCATGCCACCAATAGCTGCTGATGTTGGATTATGTCTTCAGTGTCTCTGTAACACAGAGATATAACCAATATGATATACTACTACCTGCTGGTAAGGCaatatgttgtgtgtatgtgtgtgtttttcttttctttttctatcttATTTAGATCTGACTGTGGTCCAATTTAATACAGTTGCATTTTGGGGAACAATTGCAGATAGATGTAACCAGGAAATGTGCAAACcaatgggatttgttttcatacATAAgcaaaataaagtaataaactAGGAAATGTTATTGAAATACTGACTATTGTTTTAAATTTGGTCAGTGCCTGTTTACAGAGCAGATATTGTGATCAAATGCAATATTTTATGTTATCCATTTATAATTTGTCCAGTGTCTCTGTTTTAATGTAAGCCAGCCTTTTGAATTGTAACATTCCATATGATGTAGTCTACATCTCTAATGTATCTCCTCCCCTTTTTATCTGTAATATTTGACACTTCTTCCAGAGTCACAAATAAAGCTTGTGTCCATCTCTTCAGTTA
>XM_039824893.1
AAACTCCTCTCGAGTGAAACTTTTCGCTGCAACTCCGTCGGTCCACCTTAAGCGCACACGCAAACGCAGGAGGCGTACAGTGAGGTTTCCGCTTCTCAGTTGGGCTCGGACCGCGGCTCGCGAAAAACACCGTGTGTAACGTACAAGGTTGACGCACTAAGGTAGAAAaaaaggcaagaaaaaaaagcGAATCAACCGAGCAAAAAAGATGTCCGAATCTAAGTACCGCGAGTGGATCCTGGACACTATCGACTCGCTCCGGTCGCGAAAAGCCCGGCCGGACTTGGAGAGAATTTGCCGAATGGTCCGGAGACGACACGGGTCCGAGCCCGACCGAACCTGCGCAGAACTGGAGAAACTGATTCAAGAACAAACCGTGCTGAAAGTTAACTACAAGGGCTCTATTTCATACCGAAACGCCGCCAAGGTTCAGCGgagaagcagaaaaaaagacgaTGTAACGTTAACGACGGCTGCGAGAAGGAGCGCGGTGGAAGAAGCTAGTCATTCTGACTTGAGCAACGGGGACAGCGCTTTCGGTCCTGTTGACCAGGACGAGGAGGATTTGGAGGCTGACACATCTCTGGCAATGGACACAGACAGTAATGCAGATGAGGAGGGGGCTGATGAGAGCCGGGATGGGCAGGACAGATCCTCTCCTGGCCACACATATAAAGATGCCGCTGTGCACTGTGCCTCTGTGCGAGCCGCCTCTGCCCCCTGCTCCCCCTCTGGCACTCGCCCTGGCCCCGGCCCTGCCTCCGGTCTGGACTGTGCCTCTTTCCAGAAGGCTGGTGAGAGGCCCAGCTCCTTGCCCCCTTCCAGCCCCAGGGCCCTCACACACAATGACTGGGCCTATCATTCTACTGTCTGCCCAGCAGAGCGCCAGCACCCAGGAATGCAAAGAGACAAAGcagcagcagccatgaagCCAGCAATCCACTCTGCAACTACCAGCCCCTGCGCTTTAAAGAACAACATGAAGAAGGAAGATGAAGGCAAGGCGGTGGATAGTGGCCTTTCGTCTGACCAGTTAGTACCGGACTATGCAGCAGGGCTGGATGAGACCAGGAATGTATCTGATGGAAGACCACAGGCACTTTCTTTGCCATCTGACAACTGTACATTAAAGAACAAGATAGATATACCCTCCATCACAGCAGCCGAAGACAGTCTTCTGAATGGTGGTAAAGGGGATGAAGTctTTGTGAAGAAGGAGATGATGAGCCAGAACTTAATGCAGTGGACTGTGGCAGATGTGGCCAGTTACTTCTCAGCTGCGGGCTTTCCAGATCAGGCTGTGGCGTTTCGAACACAGGAGATTGACGGGAAGTCTCTTCTCctaatgcagcgcagtgacgtcTTGACTGGTTTGTCTATCAGACTCGGCCCTGCACTCAAAATCTATGAGCGCCATGTAAAGGTGCTGCAGAGGACCCACTTCTTGGAATATGAAGACCTCTGAACTGGTGCTTCacatgacagacagacaattcTGCATTGACCCAAACGTGAATGCAGTGCCCTCTCCCATCTAGGTCCTGCCACCCACCTTCATATACACAATATGTAGAGGGTGAGTGGGGGGAAAGACTGCGGTggaattaactttcactgtgaGAATGACCAGAAACTGAAAGACAGTCATCCTACCTCTCATTATGGTCTTTGGTTTTCAAATTGTTTTCGATTTACCCATGTGGCCGTTCGATTGCATTGTCAAGGGAATAGACTGGTACGTTCAGTATGTTTGAAAGTGGAGTTGCAATGACCTTTCTGCAAGAGTAAAAGATAGATAAGCAGCCATTGAAGGGGACTGAGCCTTGCACCAAGTGGACCACCCATGGGTTAATGTACCCACAGAGACATGTTGCACTGCATTGTGCTGCGAGCAAAGCGTTGTCACAGTTTTGGGTCCACAAGAGAATGTTGGTTTGGCAGTGGCTCTAAAATTTCAACCTGCATCCTCGCTCGATCTGTTATGGTACCTTTTGTTACTCCAGAAAGTCTTTGTAAGTCACACAGATAAACATAAAGCACATCTATTGGGAGTTTTCCTTTTGATTCCGTTAAATGAAATGTTATCAAAGTGCTGGGGAAGTCAGATGCCTGACCCATCATGCCACCAATAGCTGCTGATGTTGGATTATGTCTTCAGTGTCTCTGTAACACAGAGATATAACCAATATGATATACTACTACCTGCTGGTAAGGCaatatgttgtgtgtatgtgtgtgtttttcttttctttttctatcttATTTAGATCTGACTGTGGTCCAATTTAATACAGTTGCATTTTGGGGAACAATTGCAGATAGATGTAACCAGGAAATGTGCAAACcaatgggatttgttttcatacATAAgcaaaataaagtaataaactAGGAAATGTTATTGAAATACTGACTATTGTTTTAAATTTGGTCAGTGCCTGTTTACAGAGCAGATATTGTGATCAAATGCAATATTTTATGTTATCCATTTATAATTTGTCCAGTGTCTCTGTTTTAATGTAAGCCAGCCTTTTGAATTGTAACATTCCATATGATGTAGTCTACATCTCTAATGTATCTCCTCCCCTTTTTATCTGTAATATTTGACACTTCTTCCAGAGTCACAAATAAAGCTTGTGTCCATCTCTTCAGTTA
>XM_039824894.1
CTTAAAACTCCTCTCGAGTGAAACTTTTCGCTGCAACTCCGTCGGTCCACCTTAAGCGCACACGCAAACGCAGGAGGCGTACAGTGAGGTTTCCGCTTCTCAGTTGGGCTCGGACCGCGGCTCGCGAAAAACACCGTGTGTAACGTACAAGGTTGACGCACTAAGGTAGAAAaaaaggcaagaaaaaaaagcGAATCAACCGAGCAAAAAAGATGTCCGAATCTAAGTACCGCGAGTGGATCCTGGACACTATCGACTCGCTCCGGTCGCGAAAAGCCCGGCCGGACTTGGAGAGAATTTGCCGAATGGTCCGGAGACGACACGGGTCCGAGCCCGACCGAACCTGCGCAGAACTGGAGAAACTGATTCAAGAACAAACCGTGCTGAAAGTTAACTACAAGGGCTCTATTTCATACCGAAACGCCGCCAAGGTTCAGCGgagaagcagaaaaaaagacgaTGTAACGTTAACGACGGCTGCGAGAAGGAGCGCGGTGGAAGAAGCTAGTCATTCTGACTTGAGCAACGGGGACAGCGCTTTCGGTCCTGTTGACCAGGACGAGGAGGATTTGGAGGCTGACACATCTCTGGCAATGGACACAGACAGTAATGCAGATGAGGAGGGGGCTGATGAGAGCCGGGATGGGCAGGACAGATCCTCTCCTGGCCACACATATAAAGATGCCGCTGTGCACTGTGCCTCTGTGCGAGCCGCCTCTGCCCCCTGCTCCCCCTCTGGCACTCGCCCTGGCCCCGGCCCTGCCTCCGGTCTGGACTGTGCCTCTTTCCAGAAGGCTGGTGAGAGGCCCAGCTCCTTGCCCCCTTCCAGCCCCAGGGCCCTCACACACAATGACTGGGCCTATCATTCTACTGTCTGCCCAGCAGAGCGCCAGCACCCAGGAATGCAAAGAGACAAAGcagcagcagcagccatgaagCCAGCAATCCACTCTGCAACTACCAGCCCCTGCGCTTTAAAGAACAACATGAAGAAGGAAGATGAAGGCAAGGCGGTGGATAGTGGCCTTTCGTCTGACCAGTTAGTACCGGACTATGCAGCAGGGCTGGATGAGACCAGGAATGTATCTGATGGAAGACCACAGGCACTTTCTTTGCCATCTGACAACTGTACATTAAAGAACAAGATAGATATACCCTCCATCACAGCAGCCGAAGACAGTCTTCTGAATGGTGGTAAAGGGGATGAAGTctTTGTGAAGAAGGAGATGATGAGCCAGAACTTAATGCAGTGGACTGTGGCAGATGTGGCCAGTTACTTCTCAGCTGCGGGCTTTCCAGATCAGGCTGTGGCGTTTCGAACACAGtgactgatgggaacaacaa

Function

NR:

description
PREDICTED: atherin-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824892.1 True 2657 mRNA 0.47 7 15705788 15717834
XM_039824893.1 False 2655 mRNA 0.47 7 15705787 15717834
XM_039824894.1 False 1344 mRNA 0.54 7 15705783 15715486

Neighbor

gene id symbol gene type direction distance location
prkacaa prkaca,LOC104918597,LOC103367163,LOC100700452,LOC107378291,LOC101470440,LOC102230641,LOC107093417 coding upstream 2534 15682339 ~ 15703249 (+)
asf1ba LOC104960312,LOC106534676,LOC108241280,LOC102230375,LOC101069596,LOC102210765 coding upstream 24103 15675152 ~ 15681680 (+)
tubb4bl tubb4a,LOC103367161,LOC100712088,LOC103372938,LOC107711200 coding upstream 36396 15666386 ~ 15669387 (+)
LOC120574430 LOC104960337 coding upstream 44726 15660071 ~ 15661057 (+)
LOC120574823 NA coding upstream 135474 15567077 ~ 15570309 (+)
dnajb1a LOC104918593,LOC103367166,LOC104960307 coding downstream 8465 15726299 ~ 15730345 (+)
gipc1 gipc1,LOC106529657 coding downstream 14828 15732662 ~ 15737461 (+)
trim35-12 LOC101076486 coding downstream 20098 15737932 ~ 15741720 (+)
dnm2a dnm2,LOC102793658,LOC101473937,LOC102206614 coding downstream 78791 15796625 ~ 15834604 (+)
tnfsf14 NA coding downstream 117764 15835598 ~ 15844637 (+)
G155212 NA non-coding upstream 161234 15544242 ~ 15544549 (+)
G155197 LOC104918611,LOC104960327,LOC102777936,LOC100691075,LOC101487576 non-coding upstream 197464 15507053 ~ 15508319 (+)
G155180 metrnl non-coding upstream 256225 15446884 ~ 15449558 (+)
G155104 NA non-coding upstream 532420 15173092 ~ 15173363 (+)
G155077 NA non-coding upstream 590335 15055351 ~ 15115448 (+)
G155346 NA non-coding downstream 173261 15891095 ~ 15892034 (+)
G155342 adgrl1,LOC103392844 non-coding downstream 176040 15893874 ~ 15900522 (+)
G155384 NA non-coding downstream 440817 16158651 ~ 16201112 (+)
G155393 NA non-coding downstream 498680 16216514 ~ 16241082 (+)
G155413 NA non-coding downstream 596932 16314766 ~ 16314974 (+)
rasd2 NA other upstream 177313 15526854 ~ 15528470 (+)
arl16 arl16 other upstream 192973 15510093 ~ 15512810 (+)
ndel1b ndel1,LOC104940291 other upstream 301178 15366920 ~ 15404605 (+)
G155088 NA other upstream 566077 15135791 ~ 15139706 (+)
LOC120575440 LOC102304323 other upstream 713275 14992013 ~ 14992508 (+)
LOC120574525 NA other downstream 169341 15887175 ~ 15891028 (+)
LOC120574544 pet100 other downstream 541850 16259684 ~ 16262058 (+)
camsap3 NA other downstream 597998 16315832 ~ 16387522 (+)
col5a3a col5a3,LOC104952480,LOC102201017,LOC101485068,LOC102299321,LOC100695815,LOC107378343,LOC108243746 other downstream 733399 16451233 ~ 16501704 (+)
olfm2a olfm2,LOC104918560,LOC107378344,LOC100706999 other downstream 803148 16520982 ~ 16563997 (+)

Expression


Co-expression Network