pam16 (pam16,LOC106601835,LOC103358706,LOC107695711)


Basic Information

Item Value
gene id pam16
gene name pam16,LOC106601835,LOC103358706,LOC107695711
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13632142 ~ 13636162 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825280.1
CCTGGTTTATCTTGAATTCTGTAATGTCGATGCTTCCTTGAACTTTGACCCTTATCTAACCTTCGTTGGGGTACATGTGTGAAAATAGAAGCCGCACACTGTCCGAGAGAGCTGTATAATATAAAATGGCTAGATATCTCGCACAGATCATTGTGATGGGAGCACAGGTGGTGGGGCGTGCATTTGCTCGTGCTTTACAGCAAGAATTTGCAGCCAGTCAAGCAGCAGCGAAGGCCCGGAGCAGTGCAGGTCAGCACTCTGCTGCAGCCTCTAGCATTACTGGGATGAGCCTGCAAGAGGCGCAGCAAATCCTCAATGTCTCCACACTCACCCCTGAGGAGATTCAGAAGAACTACGAGCACCTTTTTAAAGTCAATGACAAGACAGTTGGCGGTTCATTTTACCTACAATCAAAAGTGGTGCGGGCTAAAGAGCGTCTAGATGAGGAACTAAGTATTCAGACACAAGAACAAAGCAAGCAGTCACAGCAGAATACGGAAACATGAAGTATGAAATGATGCTCCccctttctttcctctccccATTCTCTGTAAATTATAACCTAATAAAATCCCTTTTCTCTACTCTCAAA

Function

symbol description
pam16 Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrial inner membrane. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Human ortholog(s) of this gene implicated in spondylometaphyseal dysplasia Megarbane-Dagher-Melike type. Orthologous to human PAM16 (presequence translocase associated motor 16).

NR:

description
PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like isoform X1

GO:

id name namespace
GO:0030150 protein import into mitochondrial matrix biological_process
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex cellular_component
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K17805 PAM16, TIM16; mitochondrial import inner membrane translocase subunit TIM16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825280.1 True 592 mRNA 0.46 5 13632142 13636162

Neighbor

gene id symbol gene type direction distance location
srl srl coding downstream 45388 13572655 ~ 13586754 (-)
LOC120574398 adcy9 coding downstream 64343 13532771 ~ 13567799 (-)
crebbpb NA coding downstream 100423 13470698 ~ 13531719 (-)
trap1 trap1 coding downstream 161906 13460903 ~ 13470236 (-)
pdgfab pdgfa coding downstream 288527 13324235 ~ 13343615 (-)
coro7 LOC103358706,LOC106915773 coding upstream 647 13636809 ~ 13748602 (-)
hmox2b LOC103358700,LOC108247647,LOC100705244,LOC101479559 coding upstream 121588 13757750 ~ 13764536 (-)
LOC120575446 LOC104960164 coding upstream 223988 13860150 ~ 13863534 (-)
LOC120575451 rab26,LOC102798624,LOC101484267,LOC100707100 coding upstream 248175 13884337 ~ 13950756 (-)
LOC120574465 sstr2,LOC104918336,LOC102291375,LOC103373483 coding upstream 463293 14099455 ~ 14106823 (-)
G154601 NA non-coding downstream 377369 13254473 ~ 13254773 (-)
G154600 NA non-coding downstream 378936 13252924 ~ 13253206 (-)
G154515 NA non-coding downstream 678754 12871558 ~ 12953388 (-)
G154713 NA non-coding upstream 19856 13656018 ~ 13692471 (-)
G154717 NA non-coding upstream 119502 13755664 ~ 13827791 (-)
G154723 NA non-coding upstream 137940 13774102 ~ 13775989 (-)
LOC120575453 NA non-coding upstream 300606 13936768 ~ 13946397 (-)
G154788 NA non-coding upstream 442352 14078514 ~ 14099281 (-)
tfap4 tfap4 other downstream 306 13589483 ~ 13631836 (-)
prkar1b prkar1b,LOC107661853,LOC107653458 other downstream 210191 13335449 ~ 13421951 (-)
sun1 sun1,LOC104947709,LOC102193096,LOC103360714 other downstream 619361 12973260 ~ 13012781 (-)
iqck NA other downstream 659313 12954974 ~ 12972829 (-)
LOC120575506 LOC100697827 other downstream 894659 12735444 ~ 12737483 (-)
med9 med9 other upstream 414576 14050738 ~ 14057354 (-)
LOC120574967 mafg,LOC104918330,LOC108241257,LOC103373400,LOC101487863,LOC106533856 other upstream 818675 14454837 ~ 14471430 (-)
cenpx cenpx other upstream 889964 14526126 ~ 14529153 (-)
LOC120574989 LOC108241285,LOC103373333,LOC106518659 other upstream 897520 14533682 ~ 14543994 (-)
LOC120574213 NA other upstream 1129572 14765734 ~ 14790778 (-)

Expression


Co-expression Network