LOC120544563


Basic Information

Item Value
gene id LOC120544563
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 4735214 ~ 4750430 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU221486
gggatgtaacgttactctaatgagcagaggatctcgctcgttcttttgcttatctgctgaaaacacttcactggataaaacccatcagCGGTCAGTCGTGGCTgcagccgtgccgcaacaaatccggacctggtcgGTATTGACGGACAGCGTTGCACGGAGCCGTTCTGCATTCAGTGGAAATCCGGAGTCAGGCTTTCACTCGTTGGCAAGGAGctaaaaaagcagcaaaaggaTGCAACAGTATCTCTGAACTGATGCAGTGCTGATATCAGCAGTGACAGGACGTGCGACtcagagctctctctctctcatcacacagatacacagAAGCCACCATGACTTCCAAGATGGTCATCAATCAGCCTCAGCCTGTGATGGATTCCCGAGAGTCCGAGGAGTGGTCATCTGGGATATGTGACTGCTGTGACGACGTGCCCCAGTGTTGTTTTGCTTTCTGGTGCTTTCCCTGCTTCACCTGTATAACTACCGAAAAATATGGCgagtgtctctgtctccctctgctgGACGGCCACGGCCTCATCCCTCCCATCAATATGTCCATGAGGGTCTCCATGCGGCAGCGCTACCGCATCAAAGACACCATGTGTAAAGACTGTCTGTACTCCACCTTCTGTTATTCGTGCTCCTGGTGTCAGATGGCCCGAGAGATGAAAACCCGAAACATCCCCATCGTTCTGGTCAGTGCCAAGCACTCATAACGACCATCTCCACCCGGGCTGTCCCATCTTCCAGTTAACCACAACCTGCAACTAACTTATTAACATGTTATTATAACTACACTTTAGAATGAAGCCCATTGAGAGAAActaatgatttaaaaatatacagccTAAAGTGCTCATGTCGCTGACTGAAAATCTTGAGC
>XM_039778427.1
GCTGTGCAGCTTCTCCGGTTGGTCTGAGAGCAGAGGCCAAGAGGTGGCCGACGTCCTACCCAGGCCAGGAGGCACTATCTTGGGATAACTGCTGCCTTCCATCCCCCTGACGTCCACGGTCTCAGGAACTCCTGGTTTAAGGTATCTCTGAACTGATGCAGTGCTGATATCAGCAGTGACAGGACGTGCGACtcagagctctctctctctcatcacacagatacacagAAGCCACCATGACTTCCAAGATGGTCATCAATCAGCCTCAGCCTGTGATGGATTCCCGAGAGTCCGAGGAGTGGTCATCTGGGATATGTGACTGCTGTGACGACGTGCCCCAGTGTTGTTTTGCTTTCTGGTGCTTTCCCTGCTTCACCTGTATAACTACCGAAAAATATGGCgagtgtctctgtctccctctgctgGACGGCCACGGCCTCATCCCTCCCATCAATATGTCCATGAGGGTCTCCATGCGGCAGCGCTACCGCATCAAAGACACCATGTGTAAAGACTGTCTGTACTCCACCTTCTGTTATTCGTGCTCCTGGTGTCAGATGGCCCGAGAGATGAAAACCCGAAACATCCCCATCGTTCTGGTCAGTGCCAAGCACTCATAACGACCATCTCCACCCGGGCTGTCCCATCTTCCAGTTAACCACAACCTGCAACTAACTTATTAACATGTTATTATAACTACACTTTAGAATGAAGCCCATTGAGAGAAActaatgatttaaaaatatacagccTAAAGTGCTCATGTCGCTGACTGAAAATCTTGAGCTATAAATTTCTGTAATTCTGTAATTTCTGTAATTTCTTTATTGAGTTGTTTATTTTTAAGAGGGTTGATCTAATAACTCTCCAGCATCATTAAAGTTCCTACTGCAAgacatta
>XM_039778429.1
gccgtgccgcaacaaatccggacctggtcgGTATTGACGGACAGCGTTGCACGGAGCCGTTCTGCATTCAGTGGAAATCCGGAGTCAGGCTTTCACTCGTTGGCAAGGAGctaaaaaagcagcaaaaggaTGCAACAGTATCTCTGAACTGATGCAGTGCTGATATCAGCAGTGACAGGACGTGCGACtcagagctctctctctctcatcacacagatacacagAAGCCACCATGACTTCCAAGATGGTCATCAATCAGCCTCAGCCTGTGATGGATTCCCGAGAGTCCGAGGAGTGGTCATCTGGGATATGTGACTGCTGTGACGACGTGCCCCAGTGTTGTTTTGCTTTCTGGTGCTTTCCCTGCTTCACCTGTATAACTACCGAAAAATATGGCgagtgtctctgtctccctctgctgGACGGCCACGGCCTCATCCCTCCCATCAATATGTCCATGAGGGTCTCCATGCGGCAGCGCTACCGCATCAAAGACACCATGTGTAAAGACTGTCTGTACTCCACCTTCTGTTATTCGTGCTCCTGGTGTCAGATGGCCCGAGAGATGAAAACCCGAAACATCCCCATCGTTCTGGTCAGTGCCAAGCACTCATAACGACCATCTCCACCCGGGCTGTCCCATCTTCCAGTTAACCACAACCTGCAACTAACTTATTAACATGTTATTATAACTACACTTTAGAATGAAGCCCATTGAGAGAAActaatgatttaaaaatatacagccTAAAGTGCTCATGTCGCTGACTGAAAATCTTGAGCTATAAATTTCTGTAATTCTGTAATTTCTGTAATTTCTTTATTGAGTTGTTTATTTTTAAGAGGGTTGATCTAATAACTCTCCAGCATCATTAAAGTTCCTACTGCAAgacatta

Function

GO: NA

KEGG:

id description
ko00910 Nitrogen metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU221486 False 889 TUCP 0.49 6 4735328 4740789
XM_039778427.1 True 901 mRNA 0.48 5 4735214 4750430
XM_039778429.1 False 897 mRNA 0.47 5 4735214 4739929

Neighbor

gene id symbol gene type direction distance location
LOC120544566 si:ch1073-153i20.5,LOC103462478,LOC102204254,LOC107386469,LOC101485372,LOC103381127,LOC103379246 coding downstream 106832 4627154 ~ 4628382 (-)
LOC120544576 LOC107723971,LOC107375340,LOC107690788,LOC107579420 coding downstream 130571 4604055 ~ 4604643 (-)
LOC120544567 si:ch1073-153i20.5,si:ch73-368j24.13,LOC103462478,LOC107386469,LOC102204254,LOC103381127 coding downstream 132219 4601695 ~ 4602995 (-)
LOC120544579 LOC107375340,LOC107690788,LOC107719248,LOC107579420 coding downstream 240327 4494519 ~ 4494887 (-)
LOC120544570 LOC104935308,LOC104932967 coding downstream 261189 4473257 ~ 4474025 (-)
LOC120544239 LOC104943257 coding upstream 229989 4980419 ~ 4981366 (-)
LOC120544283 NA coding upstream 302925 5053355 ~ 5054317 (-)
LOC120544284 NA coding upstream 311605 5062035 ~ 5062985 (-)
LOC120544286 NA coding upstream 323326 5073756 ~ 5074691 (-)
LOC120544289 NA coding upstream 332080 5082510 ~ 5083454 (-)
G163391 NA non-coding downstream 13220 4567572 ~ 4721994 (-)
G163415 NA non-coding downstream 30428 4692762 ~ 4704786 (-)
G163414 NA non-coding downstream 75371 4659560 ~ 4659843 (-)
G163404 NA non-coding downstream 86871 4629657 ~ 4648343 (-)
G163403 NA non-coding downstream 91794 4642536 ~ 4643420 (-)
trnad-guc_9 NA non-coding upstream 6231 4756661 ~ 4756732 (-)
trnad-guc_10 NA non-coding upstream 8008 4758438 ~ 4758509 (-)
trnag-gcc_2 NA non-coding upstream 10996 4761426 ~ 4761496 (-)
trnag-gcc_3 NA non-coding upstream 11632 4762062 ~ 4762132 (-)
trnag-gcc_4 NA non-coding upstream 12202 4762632 ~ 4762702 (-)
LOC120544552 LOC104935312,LOC100692486,LOC101485649,LOC106922321,LOC102232317,LOC102292363 other downstream 40598 4606736 ~ 4694616 (-)
LOC120544568 LOC104932967,LOC104935308 other downstream 241863 4491005 ~ 4493351 (-)
taf9 NA other downstream 291652 4441989 ~ 4443562 (-)
G163334 NA other downstream 431166 4302566 ~ 4304048 (-)
rnasekb rnasek,LOC107554319,LOC101475670 other downstream 577590 4147863 ~ 4157624 (-)
G163767 NA other upstream 2506708 7257138 ~ 7286265 (-)
wwc1 wwc1 other upstream 2580484 7330914 ~ 7398125 (-)
LOC120543652 LOC101463747,LOC100690676,LOC102213522,LOC102314573,LOC102780849 other upstream 3111023 7861453 ~ 7887088 (-)
G164022 kctd7,LOC102776841 other upstream 3596398 8346828 ~ 8352505 (-)
rabgef1 rabgef1,LOC102778478 other upstream 3618065 8368495 ~ 8380575 (-)

Expression


Co-expression Network