LOC120544566 (si:ch1073-153i20.5,LOC103462478,LOC102204254,LOC107386469,LOC101485372,LOC103381127,LOC103379246)


Basic Information

Item Value
gene id LOC120544566
gene name si:ch1073-153i20.5,LOC103462478,LOC102204254,LOC107386469,LOC101485372,LOC103381127,LOC103379246
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 4627154 ~ 4628382 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778434.1
GCCGTCTATGAGTCACTTTCTTTCTACACGCTGAATAGAAAATGTCTGGAAGAGGAAAAACCGGAGGTAAAGCCAGAGCGAAGGCCAAGACCCGCTCCTCTCGTGCCGGGCTCCAGTTCCCCGTCGGCCGTGTCCACAGGCTGCTCCGCAAAGGGAACTACGCTCAGCGGGTCGGCGCCGGAGCTCCGGTGTATCTGGCGGCCGTGCTGGAGTACCTGACCGCTGAGATCCTGGAGCTGGCTGGAAACGCTGCCCGCGACAACAAGAAGACCCGTATCATCCCCCGCCATCTGCAGCTGGCCGTCCGCAACGACGAGGAGCTCAACAAGCTGCTGGGCGGAGTGACCATCGCTCAGGGCGGCGTGCTGCCCAACATCCAGGCCGTCCTGCTGCCCAAGAAGACCGAGAAGCCCGCTAAGAAGTAAACACCTGGAACCGGCTTCAACCAAACCAACAacggctcttttaagagccacacACATCCAACTAAAGAGAAATCCTTCTACTAGAGTGTCTGTCTGTAAATGTTAATTATAGTTTTGAATTATCCTTTTTACAAAATGTATCTACAAAAACACTTATAGTTTATATTTTCGGGTCGCATATTAAACTTTTAAGCAAGTTTAGCTAAATTTAACCACATAAATCCCACACTTGCCTGTAAATGCAAGCATACCACCACTGGAAAAATGTGTTAATAGACATTTACACCTAATAATAGTAAATTCAATTATGGTTAAAATGGCAAATACGCTACTAACAGCCTATGCAACACAAAAAatactcacacagacacaccagtAGGATACTGTAACTAAATTGATGAAAACAACAAAGTTAATTTAACCAGCATCTCTATTTCTAATATTCAAATGCATTTAGCTAAATGGATCCCTATTCCTGAGTGATACACAATTTATTTCAGTGTAATGACAAAAGTCATTCCTGATTTTGTTTCCAGTTATAAATGTTGGCCTTTTGAATTTTGTAAAAAAGTTAATGTTTCCCATCTTGCCTGGAAGACACGATGCTCTTGgtccacttttcttttttggggctGATTATGCCTCTCTTCACACCGAAAGCGAGACTGAACCGTCCCAATGTCCGGAGAATCTCATGTTGGACATCGTACAGTTGATTTGTTACAACAGCTTAACATTCTCCACTTTGTAAAGCATCtttgagttccatgtaaagcgctatataaaacttatgtattattatta

Function

symbol description
si:ch1073-153i20.5 Predicted to enable DNA binding activity. Predicted to be involved in chromatin silencing. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. Orthologous to several human genes including H2AC20 (H2A clustered histone 20); H2AC21 (H2A clustered histone 21); and H2AC6 (H2A clustered histone 6).

NR:

description
PREDICTED: histone H2A, sperm-like

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778434.1 True 1229 mRNA 0.44 1 4627154 4628382

Neighbor

gene id symbol gene type direction distance location
LOC120544576 LOC107723971,LOC107375340,LOC107690788,LOC107579420 coding downstream 22511 4604055 ~ 4604643 (-)
LOC120544567 si:ch1073-153i20.5,si:ch73-368j24.13,LOC103462478,LOC107386469,LOC102204254,LOC103381127 coding downstream 24159 4601695 ~ 4602995 (-)
LOC120544579 LOC107375340,LOC107690788,LOC107719248,LOC107579420 coding downstream 132267 4494519 ~ 4494887 (-)
LOC120544570 LOC104935308,LOC104932967 coding downstream 153129 4473257 ~ 4474025 (-)
LOC120544559 NA coding downstream 158220 4468200 ~ 4468934 (-)
LOC120544564 NA coding upstream 88638 4717020 ~ 4750395 (-)
LOC120544239 LOC104943257 coding upstream 352037 4980419 ~ 4981366 (-)
LOC120544283 NA coding upstream 424973 5053355 ~ 5054317 (-)
LOC120544284 NA coding upstream 433653 5062035 ~ 5062985 (-)
LOC120544286 NA coding upstream 445374 5073756 ~ 5074691 (-)
G163390 LOC104935308,LOC104932967 non-coding downstream 43567 4564029 ~ 4583587 (-)
G163377 NA non-coding downstream 46251 4559504 ~ 4580903 (-)
G163376 NA non-coding downstream 47484 4577538 ~ 4579670 (-)
G163317 NA non-coding downstream 206585 4341560 ~ 4420569 (-)
G163328 NA non-coding downstream 215383 4345573 ~ 4411771 (-)
G163404 NA non-coding upstream 1275 4629657 ~ 4648343 (-)
G163403 NA non-coding upstream 14154 4642536 ~ 4643420 (-)
G163414 NA non-coding upstream 31178 4659560 ~ 4659843 (-)
G163415 NA non-coding upstream 64380 4692762 ~ 4704786 (-)
trnad-guc_9 NA non-coding upstream 128279 4756661 ~ 4756732 (-)
LOC120544568 LOC104932967,LOC104935308 other downstream 133803 4491005 ~ 4493351 (-)
taf9 NA other downstream 183592 4441989 ~ 4443562 (-)
G163334 NA other downstream 323106 4302566 ~ 4304048 (-)
rnasekb rnasek,LOC107554319,LOC101475670 other downstream 469530 4147863 ~ 4157624 (-)
G163259 NA other downstream 753039 3870325 ~ 3874115 (-)
LOC120544563 NA other upstream 106832 4735214 ~ 4750430 (-)
G163767 NA other upstream 2628756 7257138 ~ 7286265 (-)
wwc1 wwc1 other upstream 2702532 7330914 ~ 7398125 (-)
LOC120543652 LOC101463747,LOC100690676,LOC102213522,LOC102314573,LOC102780849 other upstream 3233071 7861453 ~ 7887088 (-)
G164022 kctd7,LOC102776841 other upstream 3718446 8346828 ~ 8352505 (-)

Expression


Co-expression Network