LOC120544576 (LOC107723971,LOC107375340,LOC107690788,LOC107579420)


Basic Information

Item Value
gene id LOC120544576
gene name LOC107723971,LOC107375340,LOC107690788,LOC107579420
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 4604055 ~ 4604643 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778444.1
TCCTCTCCTACGTCCGCAGATAAGATGTAAATACAGCCGGTTGGGGACCGTTGACTTCATTCGTTTCATCGACTGAACTGAAAAATGTCTGGAAGAGGGAAAGGCGGGAAGGGACTCGGTAAAGGAGGCGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTAGCTCGTCGCGGCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGACCCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGTGATGCAGTCACGTACACCGAGCACGCCAAGAGGAAGACGGTGACCGCCATGGATGTGGTGTACGCTCTGAAGAGACAGGGTCGCACCCTGTACGGCTTCGGAGGCTAAACAACGACctgacaacaataacaacacaacggctcttttaagagccacacACTACTTCTAAAGAGACAATTTCTGATATTATGAATTTATTATAAAATGAGATACTTTTAGTTATAGTCTACTACTGCTGGCAAATCCTATGTTTAGTGTCATACTACACCAATCCTCAATATAAAAACTTTCTTTTAGTTTG

Function

NR:

description
PREDICTED: histone H4-like

GO:

id name namespace
GO:0001503 ossification biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0034080 CENP-A containing nucleosome assembly biological_process
GO:0045653 negative regulation of megakaryocyte differentiation biological_process
GO:0000723 telomere maintenance biological_process
GO:0000786 nucleosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11254 H4; histone H4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778444.1 True 589 mRNA 0.48 1 4604055 4604643

Neighbor

gene id symbol gene type direction distance location
LOC120544567 si:ch1073-153i20.5,si:ch73-368j24.13,LOC103462478,LOC107386469,LOC102204254,LOC103381127 coding downstream 1060 4601695 ~ 4602995 (-)
LOC120544579 LOC107375340,LOC107690788,LOC107719248,LOC107579420 coding downstream 109168 4494519 ~ 4494887 (-)
LOC120544570 LOC104935308,LOC104932967 coding downstream 130030 4473257 ~ 4474025 (-)
LOC120544559 NA coding downstream 135121 4468200 ~ 4468934 (-)
LOC120544562 LOC103395674,LOC101068541,LOC105888650,LOC101167724 coding downstream 137674 4465844 ~ 4466381 (-)
LOC120544566 si:ch1073-153i20.5,LOC103462478,LOC102204254,LOC107386469,LOC101485372,LOC103381127,LOC103379246 coding upstream 22511 4627154 ~ 4628382 (-)
LOC120544564 NA coding upstream 112377 4717020 ~ 4750395 (-)
LOC120544239 LOC104943257 coding upstream 375776 4980419 ~ 4981366 (-)
LOC120544283 NA coding upstream 448712 5053355 ~ 5054317 (-)
LOC120544284 NA coding upstream 457392 5062035 ~ 5062985 (-)
G163390 LOC104935308,LOC104932967 non-coding downstream 20468 4564029 ~ 4583587 (-)
G163377 NA non-coding downstream 23152 4559504 ~ 4580903 (-)
G163376 NA non-coding downstream 24385 4577538 ~ 4579670 (-)
G163317 NA non-coding downstream 183486 4341560 ~ 4420569 (-)
G163328 NA non-coding downstream 192284 4345573 ~ 4411771 (-)
G163404 NA non-coding upstream 25014 4629657 ~ 4648343 (-)
G163403 NA non-coding upstream 37893 4642536 ~ 4643420 (-)
G163414 NA non-coding upstream 54917 4659560 ~ 4659843 (-)
G163415 NA non-coding upstream 88119 4692762 ~ 4704786 (-)
trnad-guc_9 NA non-coding upstream 152018 4756661 ~ 4756732 (-)
LOC120544568 LOC104932967,LOC104935308 other downstream 110704 4491005 ~ 4493351 (-)
taf9 NA other downstream 160493 4441989 ~ 4443562 (-)
G163334 NA other downstream 300007 4302566 ~ 4304048 (-)
rnasekb rnasek,LOC107554319,LOC101475670 other downstream 446431 4147863 ~ 4157624 (-)
G163259 NA other downstream 729940 3870325 ~ 3874115 (-)
LOC120544552 LOC104935312,LOC100692486,LOC101485649,LOC106922321,LOC102232317,LOC102292363 other upstream 2093 4606736 ~ 4694616 (-)
LOC120544563 NA other upstream 130571 4735214 ~ 4750430 (-)
G163767 NA other upstream 2652495 7257138 ~ 7286265 (-)
wwc1 wwc1 other upstream 2726271 7330914 ~ 7398125 (-)
LOC120543652 LOC101463747,LOC100690676,LOC102213522,LOC102314573,LOC102780849 other upstream 3256810 7861453 ~ 7887088 (-)

Expression


Co-expression Network