LOC120544564


Basic Information

Item Value
gene id LOC120544564
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 4717020 ~ 4750395 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778430.1
GCCAAGAGGTGGCCGACGTCCTACCCAGGCCAGGAGGCACTATCTTGGGATAACTGCTGCCTTCCATCCCCCTGACGTCCACGGTCTCAGGAACTCCTGGTTTAAGGTATCTCTGAACTGATGCAGTGCTGATATCAGCAGTGACTGGACGTGCGACtcagagctctctctctctctctctcatcacacagatacacagAAGCCACCATGACTTCCAAGATGGTCATCCATCAGCCTCAGCCTGTGATGGTGGCCCGAGAGTCCGAGGAGTGGTCATCTGGGATATGCGACTGCTGTGACGACGTGCCCCAGTGTTGTTTTGCCTTCTGGTGCCTTCCCTGCTTCGCCTGTATAACTAGCGAGAAACACGGCgagtgtctctgtctccctctgctgGACGGCTTCGGCATGATTCCTCCCATCAATATGTCCATGAGGGTCTCCATGCGGCAGCGCTACCGCATCAAAGACACCATGTGTAAAGACTGTCTGTACTCCACCTTCTGTTATTCGTGCTCCTGGTGTCAGATGGCCCGAGAGATGAAAACCCGAAACATCCCCATCGTTCTGGTCAGTGCCAAGCACTCATAACGACCCTCATCGATCATCTCCACCCGGGCTGTCCCATCTTCCAGTTAACCACAACCTGCAACTAACTTATTAACATGTTAGTATAACTACACTTTAGACTGATGCCCATTGAGAGAAActaatgatttaaaaatatacagccTAAAGTGCTCATGTCGCTGACTGAAAATCTTGAGCTATAAATTTCTGTAATTCTGTAATTTCTGTAATTTCTTTATTGAGTTGTTTATTTTTAAGAGGGTTGATCTAATAACTCTCCAGCATCATTAAAGTTCCTACTGCAAgacatta
>XM_039778431.1
ttgctgaatctgtcttcatttcagatcaacaaagAAGCCACCATGACTTCCAAGATGGTCATCCATCAGCCTCAGCCTGTGATGGTGGCCCGAGAGTCCGAGGAGTGGTCATCTGGGATATGCGACTGCTGTGACGACGTGCCCCAGTGTTGTTTTGCCTTCTGGTGCCTTCCCTGCTTCGCCTGTATAACTAGCGAGAAACACGGCgagtgtctctgtctccctctgctgGACGGCTTCGGCATGATTCCTCCCATCAATATGTCCATGAGGGTCTCCATGCGGCAGCGCTACCGCATCAAAGACACCATGTGTAAAGACTGTCTGTACTCCACCTTCTGTTATTCGTGCTCCTGGTGTCAGATGGCCCGAGAGATGAAAACCCGAAACATCCCCATCGTTCTGGTCAGTGCCAAGCACTCATAACGACCCTCATCGATCATCTCCACCCGGGCTGTCCCATCTTCCAGTTAACCACAACCTGCAACTAACTTATTAACATGTTAGTATAACTACACTTTAGACTGATGCCCATTGAGAGAAActaatgatttaaaaatatacagccTAAAGTGCTCATGTCGCTGACTGAAAATCTTGAGCTATAAATTTCTGTAATTCTGTAATTTCTGTAATTTCTTTATTGAGTTGTTTATTTTTAAGAGGGTTGATCTAATAACTCTCCAGCATCATTAAAGTTCCTACTGCAAgacatta
>XM_039778432.1
acacaccgaacagactcgagtcaccgacctcgccagactgtcagacggccgattatcagccctgtgtgtcagcgcctttagagTCAGCGTTCATGTGTCAGGACACtgttcatgtcactcttatgtagataccttcaaAAGCCACCATGACTTCCAAGATGGTCATCCATCAGCCTCAGCCTGTGATGGTGGCCCGAGAGTCCGAGGAGTGGTCATCTGGGATATGCGACTGCTGTGACGACGTGCCCCAGTGTTGTTTTGCCTTCTGGTGCCTTCCCTGCTTCGCCTGTATAACTAGCGAGAAACACGGCgagtgtctctgtctccctctgctgGACGGCTTCGGCATGATTCCTCCCATCAATATGTCCATGAGGGTCTCCATGCGGCAGCGCTACCGCATCAAAGACACCATGTGTAAAGACTGTCTGTACTCCACCTTCTGTTATTCGTGCTCCTGGTGTCAGATGGCCCGAGAGATGAAAACCCGAAACATCCCCATCGTTCTGGTCAGTGCCAAGCACTCATAACGACCCTCATCGATCATCTCCACCCGGGCTGTCCCATCTTCCAGTTAACCACAACCTGCAACTAACTTATTAACATGTTAGTATAACTACACTTTAGACTGATGCCCATTGAGAGAAActaatgatttaaaaatatacagccTAAAGTGCTCATGTCGCTGACTGAAAATCTTGAGCTATAAATTTCTGTAATTCTGTAATTTCTGTAATTTCTTTATTGAGTTGTTTATTTTTAAGAGGGTTGATCTAATAACTCTCCAGCATCATTAAAGTTCCTACTGCAAgacatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778430.1 True 882 mRNA 0.48 5 4717020 4750395
XM_039778431.1 False 717 mRNA 0.46 4 4717020 4723954
XM_039778432.1 False 821 mRNA 0.47 4 4717020 4723800

Neighbor

gene id symbol gene type direction distance location
LOC120544566 si:ch1073-153i20.5,LOC103462478,LOC102204254,LOC107386469,LOC101485372,LOC103381127,LOC103379246 coding downstream 88638 4627154 ~ 4628382 (-)
LOC120544576 LOC107723971,LOC107375340,LOC107690788,LOC107579420 coding downstream 112377 4604055 ~ 4604643 (-)
LOC120544567 si:ch1073-153i20.5,si:ch73-368j24.13,LOC103462478,LOC107386469,LOC102204254,LOC103381127 coding downstream 114025 4601695 ~ 4602995 (-)
LOC120544579 LOC107375340,LOC107690788,LOC107719248,LOC107579420 coding downstream 222133 4494519 ~ 4494887 (-)
LOC120544570 LOC104935308,LOC104932967 coding downstream 242995 4473257 ~ 4474025 (-)
LOC120544239 LOC104943257 coding upstream 230024 4980419 ~ 4981366 (-)
LOC120544283 NA coding upstream 302960 5053355 ~ 5054317 (-)
LOC120544284 NA coding upstream 311640 5062035 ~ 5062985 (-)
LOC120544286 NA coding upstream 323361 5073756 ~ 5074691 (-)
LOC120544289 NA coding upstream 332115 5082510 ~ 5083454 (-)
G163415 NA non-coding downstream 12234 4692762 ~ 4704786 (-)
G163414 NA non-coding downstream 57177 4659560 ~ 4659843 (-)
G163404 NA non-coding downstream 68677 4629657 ~ 4648343 (-)
G163403 NA non-coding downstream 73600 4642536 ~ 4643420 (-)
G163390 LOC104935308,LOC104932967 non-coding downstream 133433 4564029 ~ 4583587 (-)
trnad-guc_9 NA non-coding upstream 6266 4756661 ~ 4756732 (-)
trnad-guc_10 NA non-coding upstream 8043 4758438 ~ 4758509 (-)
trnag-gcc_2 NA non-coding upstream 11031 4761426 ~ 4761496 (-)
trnag-gcc_3 NA non-coding upstream 11667 4762062 ~ 4762132 (-)
trnag-gcc_4 NA non-coding upstream 12237 4762632 ~ 4762702 (-)
LOC120544552 LOC104935312,LOC100692486,LOC101485649,LOC106922321,LOC102232317,LOC102292363 other downstream 22404 4606736 ~ 4694616 (-)
LOC120544568 LOC104932967,LOC104935308 other downstream 223669 4491005 ~ 4493351 (-)
taf9 NA other downstream 273458 4441989 ~ 4443562 (-)
G163334 NA other downstream 412972 4302566 ~ 4304048 (-)
rnasekb rnasek,LOC107554319,LOC101475670 other downstream 559396 4147863 ~ 4157624 (-)
G163767 NA other upstream 2506743 7257138 ~ 7286265 (-)
wwc1 wwc1 other upstream 2580519 7330914 ~ 7398125 (-)
LOC120543652 LOC101463747,LOC100690676,LOC102213522,LOC102314573,LOC102780849 other upstream 3111058 7861453 ~ 7887088 (-)
G164022 kctd7,LOC102776841 other upstream 3596433 8346828 ~ 8352505 (-)
rabgef1 rabgef1,LOC102778478 other upstream 3618100 8368495 ~ 8380575 (-)

Expression


Co-expression Network