nle1 (nle1)


Basic Information

Item Value
gene id nle1
gene name nle1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 20815276 ~ 20822560 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU226458
CaactataaaaaggcctttactCCTGTTTGCGTGCTGCAGGGTTCAGCTCCAGAGCGCTTGGTGTCTGGATCCGATGATTTCACCTTGTTCATGTGGAACCCTGCAGAAGACAAGAAGCCTCTGGCCAGGATGACTGGCCACAGCGCTCTGGTCAATGAAGTGCTCTTCTCCCCAGACGCCAGGCTCCTCGCCTCTGCTTCATTCGACAAGTCCATTAAAATTTGGGACGGACGCACAGGAAAGTACTTAACTTCCCTGCGTGGCCATGTGGCATCTGTGTATCAAGTGGCGTGGTCAGCGGACAGCAGGCTGCTGGTCAGTGGCAGCAGTGACAGCACACTTAAAGTTTGGGACATCAAGACTGGGAAGCTGAACATGGACCTGCCTGGCCATGCTGATGAGGTTTATGCAGTGGACTGGAGTCCTGATGGACAAAGAGTGGCCAGTGGCGGGAAAGACAAATGTCTCAGAATATGGAGACGATAGCCACACCTCTGTTCACTTAACTAACTTTGGCAGAGGATTTCACATCTTCTCCTATCAAGATGCCTGACAGCTGGAGTAAAGGTGGCTACACTGTACCTAATCCCCCATTTGGCTTCAGTACACAGGCTGTCAACAATAGCATTGTGTCAAGGAGCTCTAACCCAGTTATGATGCAAATGCCCTCTCCAGGTTTCGAAAACCATGTGGGAATATTAATGCTGTAAAGGTGTTTAGCGGAGTGGGAATGTAAAATGGGAGAGTTTATAATATTCAGGGCTTCCATCCATTGAGATCATTGCAAGGAGAAGCTACGCTGTAAAATGTGTGTCAGTGTTAGCATCTCAAATTGAAAGGGTTTCCATTCATGTACATGCTGTTTTGTACACATCAGGGGTGCTGACATGTTGCAAAGAACTTAACTCTTAAGTTTAAAAccttattaaaaagtcatgccCATCTGCTGAAACCCACAAACAATGTtatgcatttaaaaataaatacataacttCAATACAGAATATAATGTAATGAGATGCATACATAGAGATTAAAAAGGGATTTGACTGTACTAGGTGAACTATATACTGTAGGTGACAGGCGGACCTGTGAGGCAACAGGTGGGAGTGTTTTGATACCATCCTCTGTGATGTTAATGCCGACCGCTCGTCCTGCACCTTCAGCCTTTaatctcctctgtcctctgtctgcGCTCAGCAAAGCCTCAGCCTGCTGATTTTTCTGACGCTGCGGTGAGGCCAAGTGCCACCAGCTTTTTACTCTCTGATCCTCCATCccactgagaaaaaaaacagactccCCATTACAGTTAGAATAACCTGTTTTACTTTCTGTATTTAACCGGCTTTGTGAATATTtgatatgaataaatattta
>XM_039777013.1
CATTACACTCCCATAATACCTTGCGTGAGTCCGTTCACTGACAGTCGTTTTGGTAGAATCTTTCCTCTGAAGGCTCTTCGATGTTATACACGTGGGGAGTTTGAACACATCGCTACCTCGCTAAAGGTGAAGATCCAACTCCGAGGATGACGAGTGAGGACGTGGAGCGGCTGTTGATCCAGTTTCAGGATGAAGAAGGGGAGGTTCTGGGTTCACCTTTTGATGTGCCTTTGGACATCACTCCAGACAAACTACAGCTCGTCTGCAATGCACTGCTACAGAAGGAGGAGCCAGTGCCACTGGCATTTTTTGTGCGCGGAGAGGCTGAGGTGGTGTCCAGTCTGAGATTGTGTGTGCAGGCTCTTGGGGTTGAGACAGAGCAAGTTCTGCCAGTGGTGTACCAGCCTCAGGCTGTGTTCAGGGTTCGAGCTGTGGCCCGTTGTACCAGCACACTACAGGGACACACAGAAGCCGTCATCTCGACTGCTTTCAGCCCCACCGGCAAATACCTTGCGAGCGGTTCAGGTGATACCACAGTGCGTTTTTGGGACTTGATGACAGAGACACCCCACCACACTGCCAAAGGACACACACATTGGGTACTGAACATCGCCTGGTCACCCGATGGCAAGAAGCTGGCTTCAGGGTGCAAGAACAGTCAGATCTGTCTGTGGGATCCAGTGACGGGTACACAGTTGGGAAAGACTTTGACTGGACACACCAAGTGGATCACTTGGCTCAGCTGGGAACCTCTCCATCTTAACCCAGAGTGTCGGTACTTGGCCAGTAGCTCCAAGGACGGCTCAATACGTGTCTGGGACACTGTGTTGGGGCGCTGTGAGAAGATCCTCACTGGACACACTCAGTCAGTCACCTGTGTAAAGTGGGGCGGAGATGGACTTCTTTACACATCCTCCCAGGACAGAACAATTAAAGTCTGGAGAGCCAAAGATGGTGTCCAGTGCAGGACTCTACAGGGTCACGCCCACTGGGTGAACACCTTGGCTCTCAGCACAGACTACGTTCTGCGCACTGGAGCTTTTGAACCTGCAACCGCCACTGTCAACCCCCAGGACCTAACTGGATCATGTAAGGATCATGTAACTTTCTTTAAGGAAACAgcctttactCCTGTTTGCGTGCTGCAGGGTTCAGCTCCAGAGCGCTTGGTGTCTGGATCCGATGATTTCACCTTGTTCATGTGGAACCCTGCAGAAGACAAGAAGCCTCTGGCCAGGATGACTGGCCACAGCGCTCTGGTCAATGAAGTGCTCTTCTCCCCAGACGCCAGGCTCCTCGCCTCTGCTTCATTCGACAAGTCCATTAAAATTTGGGACGGACGCACAGGAAAGTACTTAACTTCCCTGCGTGGCCATGTGGCATCTGTGTATCAAGTGGCGTGGTCAGCGGACAGCAGGCTGCTGGTCAGTGGCAGCAGTGACAGCACACTTAAAGTTTGGGACATCAAGACTGGGAAGCTGAACATGGACCTGCCTGGCCATGCTGATGAGGTTTATGCAGTGGACTGGAGTCCTGATGGACAAAGAGTGGCCAGTGGCGGGAAAGACAAATGTCTCAGAATATGGAGACGATAGCCACACCTCTGTTCACTTAACTAACTTTGGCAGAGGATTTCACATCTTCTCCTATCAAGATGCCTGACAGCTGGAGTAAAGGTGGCTACACTGTACCTAATCCCCCATTTGGCTTCAGTACACAGGCTGTCAACAATAGCATTGTGTCAAGGAGCTCTAACCCAGTTATGATGCAAATGCCCTCTCCAGGTTTCGAAAACCATGTGGGAATATTAATGCTGTAAAGGTGTTTAGCGGAGTGGGAATGTAAAATGGGAGAGTTTATAATATTCAGGGCTTCCATCCATTGAGATCATTGCAAGGAGAAGCTACGCTGTAAAATGTGTGTCAGTGTTAGCATCTCAAATTGAAAGGGTTTCCATTCATGTACATGCTGTTTTGTACACATCAGGGGTGCTGACATGTTGCAAAGAACTTAACTCTTAAGTTTAAAAccttattaaaaagtcatgccCATCTGCTGAAACCCACAAACAATGTtatgcatttaaaaataaatacataacttCAATACAGAATATAATGTAATGAGATGCATACATAGAGATTAAAAAGGGATTTGACTGTACTAGGTGAACTATATACTGTAGGTGACAGGCGGACCTGTGAGGCAACAGGTGGGAGTGTTTTGATACCATCCTCTGTGATGTTAATGCCGACCGCTCGTCCTGCACCTTCAGCCTTTaatctcctctgtcctctgtctgcGCTCAGCAAAGCCTCAGCCTGCTGATTTTTCTGACGCTGCGGTGAGGCCAAGTGCCACCAGCTTTTTACTCTCTGATCCTCCATCccactgagaaaaaaaacagactccCCATTACAGTTAGAATAACCTGTTTTACTTTCTGTATTTAACCGGCTTTGTGAATATTtgatatgaataaatatttacaTCACAACTTTAA

Function

symbol description
nle1 Predicted to be involved in Notch signaling pathway and ribosomal large subunit assembly. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in alar plate midbrain region; nervous system; optic vesicle; and pharyngeal arch. Orthologous to human NLE1 (notchless homolog 1).

NR:

description
notchless protein homolog 1

GO: NA

KEGG:

id description
K14855 RSA4, NLE1; ribosome assembly protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
TU226458 False 1381 TUCP 0.45 4 20820834 20822546
XM_039777013.1 True 2503 mRNA 0.49 12 20815276 20822560

Neighbor

gene id symbol gene type direction distance location
inpp5kb LOC104945604,LOC100702630,LOC102306066,LOC101469729,LOC102200916 coding upstream 1290 20801243 ~ 20813986 (+)
pitpnab pitpna,LOC100703534,LOC103395107,LOC108237022,LOC101470402 coding upstream 14999 20784520 ~ 20800277 (+)
slc43a2b LOC101471178,LOC104939143 coding upstream 33709 20768876 ~ 20781567 (+)
LOC120543867 LOC103365129 coding upstream 47610 20752417 ~ 20767666 (+)
cadm2a cadm2,LOC102777758,LOC101472425,LOC100702992 coding upstream 128690 20458927 ~ 20686586 (+)
LOC120543782 slc47a1,LOC103365135 coding downstream 41549 20864109 ~ 20888270 (+)
tmigd1 NA coding downstream 90632 20913192 ~ 20916692 (+)
LOC120544627 LOC100703808,LOC102796895,LOC101465639 coding downstream 95668 20918228 ~ 20924379 (+)
cct8 cct8,LOC104932889,LOC102796595 coding downstream 104126 20926686 ~ 20933989 (+)
rskrb LOC104932898,LOC102076527,LOC102203318,LOC102308467,LOC103365139,LOC102796293 coding downstream 112072 20934632 ~ 20943319 (+)
G167015 NA non-coding upstream 501767 20313244 ~ 20313509 (+)
G166979 NA non-coding upstream 620844 20138733 ~ 20194432 (+)
G166824 NA non-coding upstream 1011220 19802727 ~ 19804056 (+)
G166773 hunk,LOC104954747 non-coding upstream 1125895 19686648 ~ 19689381 (+)
G166771 NA non-coding upstream 1139007 19675620 ~ 19676269 (+)
LOC120543783 NA non-coding downstream 33176 20855736 ~ 20864107 (+)
G167123 NA non-coding downstream 102036 20924596 ~ 20925407 (+)
G167195 NA non-coding downstream 209808 21032368 ~ 21032748 (+)
G167196 NA non-coding downstream 210636 21033196 ~ 21033400 (+)
G167199 NA non-coding downstream 230075 21052635 ~ 21054013 (+)
mtnr1bb LOC103354484,LOC100701643,LOC101479329,LOC101074288,LOC103475521,LOC107386965 other upstream 792744 19988882 ~ 20022532 (+)
map3k7cl map3k7cl other upstream 969223 19835353 ~ 19846053 (+)
grik1a LOC101481540,LOC100699029,LOC104923829,LOC102784741 other upstream 984251 19801593 ~ 19831025 (+)
scaf4a scaf4,LOC104923807 other upstream 1101554 19700172 ~ 19713722 (+)
trnaw-cca_18 NA other upstream 1368133 19447072 ~ 19447143 (+)
dynll2b LOC107089378,LOC101174042,LOC103395122,LOC106514090,LOC107387006,LOC103140945 other downstream 144302 20966862 ~ 20968815 (+)
layna layn,LOC100708261,LOC101467228,LOC104929931 other downstream 351434 21173994 ~ 21180752 (+)
si:dkey-71l1.1 LOC101485670,LOC102299221,LOC103355094,LOC102789525,LOC104929928 other downstream 369491 21192051 ~ 21197037 (+)
mia mia other downstream 379990 21202550 ~ 21204162 (+)
LOC120544432 NA other downstream 776523 21599083 ~ 21608848 (+)

Expression


Co-expression Network