G169011 (LOC108233807,LOC100703904,LOC106511527,LOC101466262)


Basic Information

Item Value
gene id G169011
gene name LOC108233807,LOC100703904,LOC106511527,LOC101466262
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 26827103 ~ 26829684 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU229156
AGGGCTTTAACATTTTCTTCCAGCGAGGAAATCGTCCGGCATCCAAAGCATCCTGACAGATCTTTGAAGAAAAGTAGTTGATACCCAAGGAGGCCAGACCAACAATCATGAGGGTATTGGGCACAACATGTATGTCCGAGTTATCCATTACCTCTGCCCTCCTGCGGAGCTCCGTCTTGAGGATACAGCCCAGGGTGAAGGTGATAGCCCCGGCAACTGTGGCACACCAGGAGAGGAGCCACAGTCCCTGGGCTAGCTTCACCCTTTTCTGAAAGGGGAActtcatcttcatcaccacCATGGTTGCAACGAGGGAATCCGAGTCTTAGCGGGGGAATAGGGGAAGGAGAGCGATGAGGAACGGGGGCCGATGCTGTGCTTTGTCTTATTTGTCTCGccaaaaagtgctgaaaaaagtCCAGTTATCTCCACTGACCACTATGTACCGTCCAGTGTGCCACAC

Function

NR:

description
PREDICTED: peripherin-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU229156 True 463 lncRNA 0.52 3 26827103 26829684

Neighbor

gene id symbol gene type direction distance location
cnih2 cnih2,LOC100706298,LOC107091387,LOC108276897 coding upstream 43779 26771198 ~ 26783324 (+)
prdx5 NA coding upstream 145951 26677283 ~ 26681152 (+)
LOC120544052 kcnk4,LOC101470327,LOC104926336 coding upstream 173160 26640316 ~ 26653943 (+)
adssl LOC103133900,LOC102196784,LOC102782943,LOC103363363,LOC107082552,LOC100708095 coding upstream 188929 26626662 ~ 26638174 (+)
kif4 kif4a,LOC102783241 coding upstream 212080 26595941 ~ 26615023 (+)
LOC120544222 NA coding downstream 141636 26971320 ~ 26975490 (+)
LOC120543589 NA coding downstream 281021 27110705 ~ 27116039 (+)
aspa aspa coding downstream 287527 27117211 ~ 27131295 (+)
abr abr,LOC103375456 coding downstream 306333 27136017 ~ 27288433 (+)
trnav-aac_10 NA coding downstream 449965 27279649 ~ 27279721 (+)
G169010 LOC106511527,LOC107091377,LOC100703904,LOC107386668,LOC101466262,LOC108233807 non-coding upstream 53 26824603 ~ 26827050 (+)
G168973 LOC103363373,LOC104958000,LOC104926337,LOC100697704,LOC102781095 non-coding upstream 118377 26707143 ~ 26708726 (+)
G168972 LOC104926337,LOC103394890,LOC103363373,LOC101166327,LOC105932178 non-coding upstream 120276 26706579 ~ 26706827 (+)
LOC120544072 NA non-coding upstream 202597 26622770 ~ 26624506 (+)
G168940 LOC103376870 non-coding upstream 207330 26619525 ~ 26619773 (+)
G169018 NA non-coding downstream 9308 26838992 ~ 26839557 (+)
G169027 NA non-coding downstream 128011 26957695 ~ 26960639 (+)
G169060 NA non-coding downstream 209170 27038854 ~ 27081661 (+)
G169095 ubb,ubc,LOC107553588 non-coding downstream 462261 27291945 ~ 27297777 (+)
G169157 NA non-coding downstream 595469 27425153 ~ 27426322 (+)
banf1 banf1,LOC106523121,LOC104926323,LOC108233898 other upstream 139840 26681536 ~ 26687263 (+)
esrra esrra,LOC103363365,LOC100707827,LOC104926321,LOC106534575 other upstream 151308 26659358 ~ 26675795 (+)
LOC120544064 tmem164 other upstream 258603 26543796 ~ 26568500 (+)
nlgn2b nlgn2b,LOC104920019,LOC101475673,LOC100709892,LOC102787387 other upstream 603658 26000063 ~ 26223445 (+)
LOC120543603 LOC103357742,LOC104968170 other upstream 934572 25868154 ~ 25892531 (+)
G169042 stip1 other downstream 132522 26962206 ~ 26965040 (+)
shpk shpk,LOC102781293 other downstream 690347 27520031 ~ 27531315 (+)
ftr82 LOC104966639,LOC103359483,LOC104933521,LOC108233798,LOC106511051 other downstream 1966828 28796512 ~ 28802885 (+)
LOC120544198 vmp1 other downstream 2052050 28881734 ~ 28942332 (+)
G169789 map6 other downstream 3116190 29945874 ~ 29971107 (+)

Expression


Co-expression Network