LOC120544072


Basic Information

Item Value
gene id LOC120544072
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 26622770 ~ 26624506 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636437.1
CCTCGCTGCCATTGCTTCGCCGTCTTGGCTGACATTTACATCGAAATGCGCCTCTTTTAGCTTCTCTTCACTGTCAGTATCACCTTCTGTGTCTTCGTCTGTCTTGGTCCTGTctgctctttttcttcttttctgtatTCCCCTCTGCTGCTCTGGCTCCGGCTCCCTGTGTCAGACAACCCGCTGCTGCTCTTCAAACCTTTGGCCTCGTCCTGTGAAAGCCAGCGGGCCATGCATTTGAAAGCATTTCCACACCAGCACACAACACTGAAAACGCATAGGTTTATCCACCTCTAACATGGCTGACTTGGAGAAGAACTGGAGAAGCTGCAGTTTGTCAGCGACGAGCCTTCTGGTGCTTGCTGGATGTAACAGCAACTCCATGTGGAAGCGCTGTCTGTTCCAGTGGAGGTGCTGTTACCTGCAGAGAGCCGCCGAACGCAACACGACGAGGCCTGAACACTTCCTGAGAGGTGGCGAAGCTCGCTGTTTCATTAAATGTtgagttcattttttttttttttttgaagtagCTGAAGAGTAATGGGACACAAGGGGATGACCTATGAATTGACAGCCAGTGATTGTAACATCTGCCTGTCAGTTCTGTAGGCCACTGCTGTGTTTGTCCCTCTGAATgcctacagtacagtatgtggatGTGTCTACAGTCGGTGTATCGACGAGCCAGCTGGGACGTTTGTGCCTTTTATACACATCGCAATTGTTTTTGAAGCATATTTTACAATGAATAAAGTTTGAATGTGTTGCTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636437.1 True 775 lncRNA 0.48 2 26622770 26624506

Neighbor

gene id symbol gene type direction distance location
kif4 kif4a,LOC102783241 coding upstream 7747 26595941 ~ 26615023 (+)
gabra3 gabra3,LOC103133906,LOC103363372,LOC102292396,LOC101472157,LOC102198311 coding upstream 95926 26412161 ~ 26526844 (+)
tmlhe tmlhe,LOC102785621 coding upstream 355079 26256010 ~ 26267691 (+)
tmem88a tmem88,LOC104942396,LOC103394747,LOC101077877,LOC107386618 coding upstream 418969 26200742 ~ 26203801 (+)
kdm6bb LOC105024598,LOC105902372 coding upstream 425219 26169293 ~ 26197551 (+)
adssl LOC103133900,LOC102196784,LOC102782943,LOC103363363,LOC107082552,LOC100708095 coding downstream 2156 26626662 ~ 26638174 (+)
LOC120544052 kcnk4,LOC101470327,LOC104926336 coding downstream 15810 26640316 ~ 26653943 (+)
prdx5 NA coding downstream 52777 26677283 ~ 26681152 (+)
cnih2 cnih2,LOC100706298,LOC107091387,LOC108276897 coding downstream 146692 26771198 ~ 26783324 (+)
LOC120544222 NA coding downstream 346814 26971320 ~ 26975490 (+)
G168940 LOC103376870 non-coding upstream 2997 26619525 ~ 26619773 (+)
G168889 NA non-coding upstream 10051 26574846 ~ 26612719 (+)
G168887 NA non-coding upstream 88739 26533731 ~ 26534031 (+)
G168885 NA non-coding upstream 92612 26527862 ~ 26530158 (+)
G168860 NA non-coding upstream 352638 26268236 ~ 26270132 (+)
G168972 LOC104926337,LOC103394890,LOC103363373,LOC101166327,LOC105932178 non-coding downstream 82073 26706579 ~ 26706827 (+)
G168973 LOC103363373,LOC104958000,LOC104926337,LOC100697704,LOC102781095 non-coding downstream 82637 26707143 ~ 26708726 (+)
G169010 LOC106511527,LOC107091377,LOC100703904,LOC107386668,LOC101466262,LOC108233807 non-coding downstream 200097 26824603 ~ 26827050 (+)
G169011 LOC108233807,LOC100703904,LOC106511527,LOC101466262 non-coding downstream 202597 26827103 ~ 26829684 (+)
G169018 NA non-coding downstream 214486 26838992 ~ 26839557 (+)
LOC120544064 tmem164 other upstream 54270 26543796 ~ 26568500 (+)
nlgn2b nlgn2b,LOC104920019,LOC101475673,LOC100709892,LOC102787387 other upstream 399325 26000063 ~ 26223445 (+)
LOC120543603 LOC103357742,LOC104968170 other upstream 730239 25868154 ~ 25892531 (+)
LOC120575613 LOC103357740,LOC104968174 other upstream 776393 25839404 ~ 25846377 (+)
LOC120544202 LOC104958513,LOC101062417,LOC108233857,LOC103359319 other upstream 1633381 24986465 ~ 24989389 (+)
esrra esrra,LOC103363365,LOC100707827,LOC104926321,LOC106534575 other downstream 34852 26659358 ~ 26675795 (+)
banf1 banf1,LOC106523121,LOC104926323,LOC108233898 other downstream 57030 26681536 ~ 26687263 (+)
G169042 stip1 other downstream 337700 26962206 ~ 26965040 (+)
shpk shpk,LOC102781293 other downstream 895525 27520031 ~ 27531315 (+)
ftr82 LOC104966639,LOC103359483,LOC104933521,LOC108233798,LOC106511051 other downstream 2172006 28796512 ~ 28802885 (+)

Expression


Co-expression Network