LOC120575668


Basic Information

Item Value
gene id LOC120575668
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 35322260 ~ 35324252 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU231818
GTATTACACAAGTTGATTTGAATTGTATAACTAGAAAACAGATTGGGTCCAAATATAATCCCTGTCAGCTACTGAATTAGCAAACAATGCCGTCTCTGAAGAAACAGGACCCTAGGATATATTTCGGAACTGTATGAGATTGTGCTAAAATAAGATGTCACCTGTTAGTTGTAATGTTGTTATTTAGTCATACCAAAGCTAACATGCTCTGTActgtgcctttttatttttctaggaCCCGTCCCGATCCTCCACTTAGgggacagcagcagagacaatGGCCATGAAGCCTAAAGTTCAAGTCCAAATAGGTCCAGTGATTTGGATTATGGGCAGCAGCTACATTCGTCGTGGGGAAGAGAGGGCCAGAGAGACCATGGGGGCCAATCTTGGCCTAGCGGCCAAGGTTCACTGGTTTGGCTGGGGTGGACTTCGAAGGCACGGACTCCTTCCTTTCTTCAACCGGTCCCTTAGAGGAAGAGCAGCCCCGGATATCCTGCTGATTCACTGCGGCGGGAACGACTTGGGATGCAGGAAGAGCATCGATCTCGTCGCAGCGATGAAGCAGGATCTGCAACATCTCCATCGGCGTTTCCCTCAGATGATCATCGTGCTGTCTGACATCACCCAGAGACGTCGGTGGAGATCGGGCCATCCGGGGAAAATTGACAAGTCCCGTAAATGGGTGAACAGTGTCATGGCTACCTTTGTCTTGGGAATGCAGGGGGG
>TU231819
CTGGATTAAACCTCTCAACATGTTTTAAACATGAAACAGTTAAAGAATGTTACATTCTTTTGGGGTTGTGTATGTGCATTTTGTCTTTAGATTAATACATCATCACTTGGGTAGACACAATAACACTGTTCAATTGTCACTGCTCTTcccccccccacaaacacacacacctttctccCCTCCGTGCCATTGATGTATCACCCTAGCCATCCACCCCATggcctctctcttttcttccccACGACGAATGTAGCTAGCTTGAGAGGAGATTGTGGGTCAGCTGCCTTGTTCCcccttcctgtgtgtttgtgtctcccttttcccctctgtgtctg
>TU231820
CCATGATTCACACCTGCAGTATTTATACCCGGGCTGTTCACCTCTTCAGCGCTAGATCGTTACATGCTCCTACGTGATCCTGCTGTTACCTGCTTCCTACCTGCCGTGCTGCCTGCCTCACGCCACTCAGACACAACCACCTGCTTCTCCTGGATTCTACTCGGAACTTCTTCGGATCTGCCACTGCCTGGTTCCCTCAAGCTGCAGTCCATTCCCAGAAGACTACAAGCTCAGCCTTGATTGTTCA
>XR_005642037.1
ACAAGTTACTTGTGTGTGTTAACATATGTGTACTGACactttcacataaaaaaaacacttttatgaTTGTGATTACTGTATGCTATTAACAGGTCCAGTGATTTGGATTATGGGCAGCAGCTACATTCGTCGTGGGGAAGAGAGGGCCAGAGAGACCATGGGGGCCAATCTTGGCCTAGCGGCCAAGGTTCACTGGTTTGGCTGGGGTGGACTTCGAAGGCACGGACTCCTTCCTTTCTTCAACCGGTCCCTTAGAGGAAGAGCAGCCCCGGATATCCTGCTGATTCACTGCGGCGGGAACGACTTGGGATGCAGGAAGAGCATCGATCTCGTCGCAGCGATGAAGCAGGATCTGCAACATCTCCATCGGCGTTTCCCTCAGATGATCATCGTGCTGTCTGACATCACCCAGAGACGTCGGTGGAGATCGGGCCATCCGGGGAAAATTGACAAGTCCCGTAAATGGGTGAACAGTGTCATGGCTACCTTTGTCTTGGGAATGCAGGGGGGTATCGGGCATCACCCTCAAATTGAATTTGACAAGTCTGAACTGTTTCTTAGGGATGAAGTTCATTTATCCACTAGGGGTaatgatatttttttaaataatttagcTGAAGGCTTGAGAGTCTTAATCCAGTAGGGGTGATACTGGATTAAACCTCTCAACATGTTTTAAACATGAAACAGTTAAAGAATGTTACATTCTTTTGGGGTTGTGTATGTGCATTTTGTCTTTAGATTAATACATCATCACTTGGGTAGACACAATAACACTGTTCAATTGTCACTGCTCTTcccccccccacaaacacacacacctttctccCCTCCGTGCCATTGATGTATCACCCTAGCCATCCACCCCATggcctctctcttttcttccccACGACGAATGTAGCTAGCTTGAGAGGAGATTGTGGGTCAGCTGCCTTGTTCCcccttcctgtgtgtttgtgtctcccttttcccctctgtgtctgtctgtgctgtttGTCTCCACCTGGAAGTGGCAGGGGGCGTGTCTAGAGAAACTAGGTCAAGAGGCGTGGCCATTCATCCCTGCTCTGTCCTGGCACAGCTGATGCACATTCCATGATTCACACCTGCAGTATTTATACCCGGGCTGTTCACCTCTTCAGCGCTAGATCGTTACATGCTCCTACGTGATCCTGCTGTTACCTGCTTCCTACCTGCCGTGCTGCCTGCCTCACGCCACTCAGACACAACCACCTGCTTCTCCTGGATTCTACTCGGAACTTCTTCGGATCTGCCACTGCCTGGTTCCCTCAAGCTGCAGTCCATTCCCAGAAGACTACAAGCTCAGCCTTGATTGTTCATCTCCTCTGAGTATTTATGCCTAATAAATACTTGAACTGTT

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU231818 False 729 TUCP 0.49 2 35322260 35323291
TU231819 False 335 lncRNA 0.46 1 35323433 35323767
TU231820 False 247 lncRNA 0.53 2 35323878 35324211
XR_005642037.1 True 1384 lncRNA 0.48 2 35322782 35324252

Neighbor

gene id symbol gene type direction distance location
zgc:171929 LOC103356043,LOC102794650,LOC102293081,LOC106510912,LOC107386354 coding upstream 21753 35291315 ~ 35300507 (+)
LOC120575608 NA coding upstream 230312 35088135 ~ 35091948 (+)
LOC120543613 NA coding upstream 238434 35083122 ~ 35083826 (+)
LOC120543612 NA coding upstream 243472 35073812 ~ 35078788 (+)
LOC120543611 NA coding upstream 248807 35052442 ~ 35073453 (+)
amot LOC103356029,LOC101478708,LOC102211599 coding downstream 30037 35354289 ~ 35494261 (+)
LOC120543615 NA coding downstream 279611 35603863 ~ 35610586 (+)
trnaw-cca_19 NA coding downstream 295547 35619799 ~ 35619870 (+)
trnaw-cca_20 NA coding downstream 296502 35620754 ~ 35620825 (+)
trnaw-cca_21 NA coding downstream 297451 35621703 ~ 35621774 (+)
G170995 NA non-coding upstream 13287 35308537 ~ 35308973 (+)
G170993 NA non-coding upstream 13803 35308111 ~ 35308457 (+)
G170982 NA non-coding upstream 52272 35269227 ~ 35269988 (+)
LOC120543902 NA non-coding upstream 101221 35205423 ~ 35221039 (+)
G170954 NA non-coding upstream 149115 35171863 ~ 35173145 (+)
G171001 NA non-coding downstream 1350 35325602 ~ 35326008 (+)
G171011 NA non-coding downstream 18155 35342407 ~ 35342611 (+)
G171049 NA non-coding downstream 170432 35494684 ~ 35502476 (+)
LOC120575663 NA non-coding downstream 205536 35529788 ~ 35534061 (+)
LOC120575670 NA non-coding downstream 234124 35558376 ~ 35559266 (+)
LOC120575607 NA other upstream 234363 35083889 ~ 35087897 (+)
G170896 NA other upstream 281889 35039942 ~ 35040371 (+)
G170775 dlg2 other upstream 880110 34436960 ~ 34442150 (+)
G170735 hyou1 other upstream 985912 34332414 ~ 34336348 (+)
pknox2 pknox2 other upstream 2317921 32887581 ~ 33004339 (+)
G171409 NA other downstream 1937664 37261916 ~ 37262336 (+)
G171468 NA other downstream 2219348 37543600 ~ 37669599 (+)
G171483 NA other downstream 2281778 37606030 ~ 37616661 (+)
G171572 NA other downstream 2380431 37704683 ~ 37707766 (+)

Expression


Co-expression Network