eral1 (eral1,LOC102782944)


Basic Information

Item Value
gene id eral1
gene name eral1,LOC102782944
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 27586893 ~ 27593961 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777426.1
CTTCATAGCGGAACACGTTTCTCTTTGGCCAAAGCAACATGGTTTCACCCTGTGGCCAATGTGAATGTAAACAAGCGGCTCACCTCTGAAGCGACAAATACTGTCCTACCATCTGAGTCAAAGCTCCATGGCTTTCAGAGTGTGTAGTCGGTTTTTCAGAGACTCCGCCGTCCTCTCCAGACTGGTCGTCGTGTCTGCTCGACAGGAAAGTGCGTCATGGCTTCTCACAGCGGGAAACGCTGCCTGCAGCCGAGGAGGGAGGAACACATTTATCTTCACTCCTGCTTGCTTTATTACATCGGAGGCATTTCTCAACAGACTGATGAAAGGCAAAGCAGCCGAGGCAGACGGCAGTTTTTATCGCCTTCCAGCCTCAGTTCCGCCGGACAGCGgtgAACAATTATCTTTGTTACTGAGACATCCAGATCAGCCTGACAAGCCAAAGGTTTTAAAAGTTGCCATAATAGGTGCCCCAAATGCTGGGAAGTCCACATTGTCCAACCAGCTCCTTGGCAGAAAGGTGTTTGCTGTTTCCAAGAAAGTACACACTACGCGGTCACGTGCCCTGGGCGTCCTAACAGAGGATGACACACAGATAatTTTACTGGACACTCCTGGTCTCACCACTGTATCAAAGGTCAAAAGACACCAGCTGGAGAAGACTTTGCTCGTGGATCCCTGGAACACAGTCAAAGAAGCCGACCTAATGGTAGTCTTGGTGGATGTGGCGGACAGATGGATGTGCAGCAGGCTTGACCTGGAGGTGCTCAAATGCCTGGCCCAGCACCCTGACACCCCTGCAATCTTGGTCCTCAATAAGATAGACCTGGTTAAGGCTAAGGACAGGCTGCTGGATTTCACAGCAGAGTTGACGTGCGGAGTGGTGAACGGACGCAGAATGCGGATCAGGCCAGTGATCAAGCCTCCATGGGCTGAGAAGAGGCCAGAGAGGGAGTCCGAGTTGCCGCTGGACGAGGACGCGGGGCCCGAGGGCAGCGCTGAGCCAAACTCTGTGCTGAACAAAGAGCAGCTGAAGGCGCTGAAGAGCCGGCAGGGCTGGCCGCACTTTAAGGACGTCTTCATGCTCTCCTCTGTGGACCGAGATGACGTGGAGACGCTGAAGAGCTACTTTATGGCTGCGGCGAAGCCAGGATCGTGGCAGTACCACAGTGAGGTCCTGACGGACCAGAGTCCAGAGGAAGTCTGCGCCAACATCATCCGAGAGAAGCTTCTGGAGTATCTGCCCCAGGAAGTGCCCTATTCAATGACACAGtctGTTGAACTCTGGCAGGAAGGAGAAAATGGCGAGCTCAATATTTCTGTCAAACTTTATGCCAAGAAAGATACTCATATGAGGATGGTGATAGGCACAGCCGGCCAGATGGTAGCGCGGATGGCCCGAGAGGCTGGTGAGGACCTGAGCCACGTCTTCCTGAGGGAAGTGAAGCTGAAGCTTTCAGTCAAGCTGAGGAAGTGAAGAGGATGGACGGACTTTAATGATGAAGAGGtggaaactagggctgcacaatatgtttgttttttatcatcATCCTGATATCAACTGGTGtaataataaacacatcgcgaaagacactcaaAGAAACATTAATAGGAAACTTCACTTTCAAATGTAACTgtagattatttattttttagtggtgcctttttatattcagttcaatgttcaatttgttcaataaaacaatgttagaaatga

Function

symbol description
eral1 Predicted to enable rRNA binding activity and ribosomal small subunit binding activity. Predicted to be involved in ribosomal small subunit assembly. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrial matrix. Human ortholog(s) of this gene implicated in Perrault syndrome 6. Orthologous to human ERAL1 (Era like 12S mitochondrial rRNA chaperone 1).

NR:

description
GTPase Era, mitochondrial isoform X1

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03595 era, ERAL1; GTPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777426.1 True 1717 mRNA 0.50 12 27586893 27593961

Neighbor

gene id symbol gene type direction distance location
trpv1 NA coding upstream 37982 27531428 ~ 27548911 (+)
p2rx5 p2rx5 coding upstream 71004 27505157 ~ 27515889 (+)
timm22 timm22 coding upstream 86455 27497560 ~ 27500438 (+)
zswim7 zswim7 coding upstream 196664 27374901 ~ 27390229 (+)
ncor1 ncor1 coding upstream 213293 27314554 ~ 27373600 (+)
si:ch211-283g2.1 LOC104963922,LOC107387056,LOC108233828,LOC100700598 coding downstream 36305 27630266 ~ 27637033 (+)
LOC120543630 myo19,LOC102784659 coding downstream 77558 27671519 ~ 27692259 (+)
vkorc1l1 vkorc1l1 coding downstream 108196 27702157 ~ 27713055 (+)
hpda LOC102309211,LOC103363687,LOC101479635 coding downstream 328669 27922630 ~ 27929889 (+)
supt4h1 supt4h1 coding downstream 441286 28035247 ~ 28037627 (+)
LOC120543667 NA non-coding upstream 109762 27476285 ~ 27477131 (+)
G169157 NA non-coding upstream 160571 27425153 ~ 27426322 (+)
G169095 ubb,ubc,LOC107553588 non-coding upstream 289116 27291945 ~ 27297777 (+)
G169060 NA non-coding upstream 505232 27038854 ~ 27081661 (+)
G169027 NA non-coding upstream 626254 26957695 ~ 26960639 (+)
G169209 LOC107090330,LOC102785725,LOC102220786 non-coding downstream 106157 27700118 ~ 27701522 (+)
G169215 NA non-coding downstream 119114 27713075 ~ 27713796 (+)
G169254 NA non-coding downstream 121434 27715395 ~ 27716931 (+)
G169294 LOC103363689 non-coding downstream 206483 27800444 ~ 27832402 (+)
G169342 NA non-coding downstream 453374 28047335 ~ 28047574 (+)
shpk shpk,LOC102781293 other upstream 55578 27520031 ~ 27531315 (+)
G169042 stip1 other upstream 621853 26962206 ~ 26965040 (+)
banf1 banf1,LOC106523121,LOC104926323,LOC108233898 other upstream 899630 26681536 ~ 26687263 (+)
esrra esrra,LOC103363365,LOC100707827,LOC104926321,LOC106534575 other upstream 911098 26659358 ~ 26675795 (+)
LOC120544064 tmem164 other upstream 1018393 26543796 ~ 26568500 (+)
ftr82 LOC104966639,LOC103359483,LOC104933521,LOC108233798,LOC106511051 other downstream 1202551 28796512 ~ 28802885 (+)
LOC120544198 vmp1 other downstream 1287773 28881734 ~ 28942332 (+)
G169789 map6 other downstream 2351913 29945874 ~ 29971107 (+)
uvrag uvrag other downstream 2417372 30011333 ~ 30113690 (+)
G169814 NA other downstream 2534571 30128532 ~ 30128932 (+)

Expression


Co-expression Network