supt4h1 (supt4h1)


Basic Information

Item Value
gene id supt4h1
gene name supt4h1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 28035247 ~ 28037627 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826343.1
GGTCCTCACAGTCAGTGACGTAATTCCCCAGCGACTGAGACATATTCAAAACATTAATCCGTTTGATATTTGGGTATTACAATCGCATTTTCTCCAGGAGCTTAAACATAATGGCATTGGAAACGGTCCCCAAAGACCTTCGCCATCTGCGTGCCTGCCTTCTCTGTTCTTTAGTGAAGACCATTGACCAGTTTGAATACGACGGATGTGACAACTGTGAGTCGTACCTTCAGATGAAGGGGAACCGAGAGATGGTTTATGAATGCACAAGTTCCTCGTTTGATggCGTAATATCCATGATGAGTCCTGAGGACAGCTGGGTAGCTAAATGGCAGAGGATAGGCAACTTCAAGCCAGGCGTATATGCAGTGTCAGTGACAGGAAGACTACCTCCAGGTGTGGTGAGAGAGTTGAAAAGCAGAGGAGTGATCTACAAATCCAGAGATACAGCAGTGAAGTCATAAACCTGGCTGCTTCCAGTTGTCTGACTAGCCACACCAGAGCAGTATCCTACTGCAGCACCAACTCCTGGAAGACATAACAACAGCGGGACTCAATTTGATCATGTCTGTGATGTCTTATGGGATTGCCCTCCAACTGTTcaatttttgtttgttgtgattGGAAATATTAGCATGCATGCTTACATGGGGAGAAGTGGAtgtcttttatttctttgattaattaagaaaaaaataaaggtcTGTTTTTATTAGAAATGTGAGTATTTGTTTTTAGCACAGTAACCCGTAAACACAGTGAGATTTGTTGATTCAGGTACAAGCAGTGTGTTATTCAGTAGACAGTGAAATGCTGTGGGTTTCAGATCGTTCCCAGTGCCAAAGATGATACAGCACAATTCCAGTTCCCCTAGAAAATGACCCTAAAAACAGCTTCCCAAAAGTCCatgaaaaaaaactgcaaaaaacaAAGCTCGTCAAAGTCCACTGTGTACAGTATTCAATAACTAGTTTGCTCAATACAACAAATTGGTGTATAGAGTGTATATGACATGAAGACACTGAACATTGTTCAGAAAGTTCTTTGTATTCACAGAGAAATCCCCCTAGTGTAGCTACTGAACAAGCGACTGATTGGAAACCCCACAGAGGAGGAACTGAACAGTTTATCATTTCTGTTTTGAACAAATACTAATAAAACATccttgtatta

Function

symbol description
supt4h1 Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in chromatin organization; mRNA processing; and regulation of transcription elongation from RNA polymerase II promoter. Predicted to act upstream of or within positive regulation of DNA-templated transcription, elongation. Predicted to be located in nucleus. Predicted to be part of DSIF complex. Orthologous to human SUPT4H1 (SPT4 homolog, DSIF elongation factor subunit).

NR:

description
transcription elongation factor SPT4

GO:

id name namespace
GO:0032786 positive regulation of DNA-templated transcription, elongation biological_process
GO:0032044 DSIF complex cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15171 SUPT4H1, SPT4; transcription elongation factor SPT4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826343.1 True 1173 mRNA 0.41 5 28035247 28037627

Neighbor

gene id symbol gene type direction distance location
hpda LOC102309211,LOC103363687,LOC101479635 coding upstream 105358 27922630 ~ 27929889 (+)
vkorc1l1 vkorc1l1 coding upstream 322192 27702157 ~ 27713055 (+)
LOC120543630 myo19,LOC102784659 coding upstream 342988 27671519 ~ 27692259 (+)
si:ch211-283g2.1 LOC104963922,LOC107387056,LOC108233828,LOC100700598 coding upstream 398214 27630266 ~ 27637033 (+)
eral1 eral1,LOC102782944 coding upstream 441286 27586893 ~ 27593961 (+)
LOC120544670 LOC103133326 coding downstream 123351 28160978 ~ 28175458 (+)
ywhag1 143g1,LOC101156793,LOC108233911,LOC107387033,LOC103041195,LOC103395178 coding downstream 141400 28179027 ~ 28197663 (+)
p2rx1 p2rx1 coding downstream 336863 28374490 ~ 28395450 (+)
LOC120575697 LOC103372553,LOC104967633 coding downstream 595382 28633009 ~ 28636517 (+)
spns3 NA coding downstream 632500 28670127 ~ 28677180 (+)
G169294 LOC103363689 non-coding upstream 202845 27800444 ~ 27832402 (+)
G169254 NA non-coding upstream 318316 27715395 ~ 27716931 (+)
G169215 NA non-coding upstream 321451 27713075 ~ 27713796 (+)
G169209 LOC107090330,LOC102785725,LOC102220786 non-coding upstream 333725 27700118 ~ 27701522 (+)
LOC120543667 NA non-coding upstream 558116 27476285 ~ 27477131 (+)
G169342 NA non-coding downstream 9708 28047335 ~ 28047574 (+)
G169354 NA non-coding downstream 170036 28207663 ~ 28259294 (+)
G169363 NA non-coding downstream 179689 28217316 ~ 28218837 (+)
G169367 NA non-coding downstream 192640 28230267 ~ 28237599 (+)
G169422 NA non-coding downstream 361780 28399407 ~ 28400916 (+)
shpk shpk,LOC102781293 other upstream 503932 27520031 ~ 27531315 (+)
G169042 stip1 other upstream 1070207 26962206 ~ 26965040 (+)
banf1 banf1,LOC106523121,LOC104926323,LOC108233898 other upstream 1347984 26681536 ~ 26687263 (+)
esrra esrra,LOC103363365,LOC100707827,LOC104926321,LOC106534575 other upstream 1359452 26659358 ~ 26675795 (+)
LOC120544064 tmem164 other upstream 1466747 26543796 ~ 26568500 (+)
ftr82 LOC104966639,LOC103359483,LOC104933521,LOC108233798,LOC106511051 other downstream 758885 28796512 ~ 28802885 (+)
LOC120544198 vmp1 other downstream 844107 28881734 ~ 28942332 (+)
G169789 map6 other downstream 1908247 29945874 ~ 29971107 (+)
uvrag uvrag other downstream 1973706 30011333 ~ 30113690 (+)
G169814 NA other downstream 2090905 30128532 ~ 30128932 (+)

Expression


Co-expression Network