LOC120544670 (LOC103133326)


Basic Information

Item Value
gene id LOC120544670
gene name LOC103133326
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 28160978 ~ 28175458 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778600.1
TGAAAAGAATGTAGGCTATTCAGTGACTATCTAACTCTGATTATTGAGTGATTGTCAGTGAATCCTAATATTCTCTGTCTGAAGGAAAATCCCCCTTGATTatcaaaagccacaacacaggtGCCTGCCTCTGTCTGTAACACAAGCCTCCCTCAGCTGTTGAGGATGCTGGAAACGTTGGAAATTACTCATCTCTAACCATCAGGGTAACAGACCTCAGCCCGACTCTTTTGTTGCGGCCTCCGTTACCTGCTGCCTGCCAGGAAGGTGCACGGCGGACATTTTGTGCTTACACAACAGCAATGTAACACAGCTTCCCGTTACCGGTGTTGAATGAACTTTACGATGGCACATGCCCATGTCTGGGAAACTGAGGTTTCTTGTTTGCTCTGTGTGCCACATAAACTTCCTTACAGCTCTCTTACATTCATGTTCGAGTGATGTGCATCACATGATCTCTGGAAACGATTTCGTTTTGAGCTACACATTTCCCAAGCCTGACCTCAGACTACCATCAATACCTACTACAGCACAATAACAACAGCTGTAGGCTCCCCCACAGAAAACAATCCAATACTATAATTAGGCAAATCTGAACCAGGACAAAAAGTAATGATTGTTTTGTAGTAGTAGAAATGTGTCTACCAATCAGTAGTTTACAACATTTGGAGGCGTGTTCACATACAGCGCAGGACTTGGGGAAGCCTAATGAGAAAGACTGAcagcatgtgaatgtgtgtgttgcaggCGGATGGTCAGTCAGGCAGCCATGCGAGGCCAGCGTGTGGTGGAGAGCGAGTGTAGGTGCTGGAACCCAGTCTGGCTGCTGGTGTCCCTGCTGGGATTCCTCGTTTTGGTGGCTGTCAGTGTGCTGCTGCGACTCGGAGACATAAAGATAGACAGACGTGCTGTTAACAcaaATGTCATACAAGCCCCCATGGGGACACAGTACCCAGTACAACTGGTGAATGGACGTAACAGGTGTGAGGGAAGAGTGGAGGTGTTCTACAATAACTCATGGGGCACAGTGTGTGACGACGACTGGGACATGGTGGACGCCAACGTGGTGTGTCGGCAGCTGGGCTGCGGCGTGGCTGTGGCAGTGGGGAGCAGCTCTCAGTTTGGACAAGGCTCAGGCCTCATCTTGCTGGACAATGTGGACTGCAGAGGAAGTGAAACAGACGTCAGCCAGTGCCGTACTCTGGACTGGGGCGTCCACAACTGTTACCACTATGAGGATGTGGGTGTTACCTGCAAAGAGCCAGCAATGGTGGGGGCAAAAGGTTTTCTGGATCCCACCACACCCCCTGTGCACAACTCCGGTTTACGAGATGGCACCATCCGTCTGGTGAATGGACAGAACTCCTGCCAGGGCCGGGTAGAGATCTACTACCACGGAGGCTGGGGGACAGTGTGTGATGACGACTGGGTCTTCAACGATGCCCGGGTGGTGTGCCAACAGATCGGCTGCGGTAATGCCGTTGCTGCACACACCAACTCCTACTTTGGCTATGGAACAGGACAGATTCTCCTAGACAATGTCAACTGCTATGGCACTGAACTGGAACTGGCGAAATGCAAAAGCCTGGGCTGGGGCAAACACAACTGTGGCCATCATGAAGACGCTGGGGTCACCTGCACTGGATCCACCACTGTACCTCCTgtggcaacaggaaataacCGAGCTCTATGGCCAACATATAACACTGAAGCAACAGAAAAGGTTCCAGTCACCACGTTACCAACTACAAAAACTGTTACAACAACTTCCACAACAAAAGGCACACCATCCATTCGTGTCGTGAATGGTAACGGTAGCTGTCAGGGTCGTGTAGAGGTACTCTACAAAACTATTTGGGGGACGGTGTGTGATGATGACTGGGACATGACCAATGCCAACGTGGTGTGCAGGCAGCTAGGCTGTGGCCCAGCTATCGCGGCTACAGTCCTGGCCTACTTCGGCTACGGTACGGGTCCCATCCTGCTGGATAATGTGGATTGCGAAGGCTCCGAACTGGAGCTGTCGAAGTGCTTCAACCTGGGCTGGGGTCAACACAACTGTGGCCATCATGAGGATGCTGGGGTTATCTGTGCACCTTTTGAATTGTACATGATAAATGGACGTGGCTTTGGAGTAACAGAAAGCATAcctgccaccaccaccaccacacaaccACCTGAGGGAACGGTGAGATTGGTGGGTGGCCAGCACCGATGCGAGGGTCGGTTGGAAATGTACTCAAATTCTGGATGGGGCACAGTGTGCGATGATGCTTGGGACCTCCCGGATGCTCAGGTTGTGTGTCGCCAACTGGGCTGTGGAGAGGCCACGGCGGCTCGGGGAGAAGCGTTCTTCGGGCCCGGCACAGGAACAATCCTGCTGGACAATCTTAAGTGCAGCGGTGCCGAGGCGTCCCTGCAGCAGTGCTCCCATATATCCTGGAATGTGCACAACTGCGACCACTCTGAAGATGCTGGTGTCACCTGCTCACTGTCGTGATTTCAGCAGAACCACACTCCCATCTCCACCATGGGTAGGAAGTGGGCGCACCAACCTGGGACTTGTATGCATTATGTAAATAACAGCTCTCACCTTGCTGAAGGAATACTCCACCACCAACAACATACAAATAACTAATATGACAATATACTATAAACTATCTATT

Function

NR:

description
PREDICTED: scavenger receptor cysteine-rich domain-containing group B protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778600.1 True 2666 mRNA 0.51 11 28160978 28175458

Neighbor

gene id symbol gene type direction distance location
supt4h1 supt4h1 coding upstream 123351 28035247 ~ 28037627 (+)
hpda LOC102309211,LOC103363687,LOC101479635 coding upstream 231089 27922630 ~ 27929889 (+)
vkorc1l1 vkorc1l1 coding upstream 447923 27702157 ~ 27713055 (+)
LOC120543630 myo19,LOC102784659 coding upstream 468719 27671519 ~ 27692259 (+)
si:ch211-283g2.1 LOC104963922,LOC107387056,LOC108233828,LOC100700598 coding upstream 523945 27630266 ~ 27637033 (+)
ywhag1 143g1,LOC101156793,LOC108233911,LOC107387033,LOC103041195,LOC103395178 coding downstream 3569 28179027 ~ 28197663 (+)
p2rx1 p2rx1 coding downstream 199032 28374490 ~ 28395450 (+)
LOC120575697 LOC103372553,LOC104967633 coding downstream 457551 28633009 ~ 28636517 (+)
spns3 NA coding downstream 494669 28670127 ~ 28677180 (+)
spns2 spns2 coding downstream 514100 28689558 ~ 28750536 (+)
G169342 NA non-coding upstream 113404 28047335 ~ 28047574 (+)
G169294 LOC103363689 non-coding upstream 328576 27800444 ~ 27832402 (+)
G169254 NA non-coding upstream 444047 27715395 ~ 27716931 (+)
G169215 NA non-coding upstream 447182 27713075 ~ 27713796 (+)
G169209 LOC107090330,LOC102785725,LOC102220786 non-coding upstream 459456 27700118 ~ 27701522 (+)
G169354 NA non-coding downstream 32205 28207663 ~ 28259294 (+)
G169363 NA non-coding downstream 41858 28217316 ~ 28218837 (+)
G169367 NA non-coding downstream 54809 28230267 ~ 28237599 (+)
G169422 NA non-coding downstream 223949 28399407 ~ 28400916 (+)
G169431 NA non-coding downstream 300452 28475910 ~ 28480156 (+)
shpk shpk,LOC102781293 other upstream 629663 27520031 ~ 27531315 (+)
G169042 stip1 other upstream 1195938 26962206 ~ 26965040 (+)
banf1 banf1,LOC106523121,LOC104926323,LOC108233898 other upstream 1473715 26681536 ~ 26687263 (+)
esrra esrra,LOC103363365,LOC100707827,LOC104926321,LOC106534575 other upstream 1485183 26659358 ~ 26675795 (+)
LOC120544064 tmem164 other upstream 1592478 26543796 ~ 26568500 (+)
ftr82 LOC104966639,LOC103359483,LOC104933521,LOC108233798,LOC106511051 other downstream 621054 28796512 ~ 28802885 (+)
LOC120544198 vmp1 other downstream 706276 28881734 ~ 28942332 (+)
G169789 map6 other downstream 1770416 29945874 ~ 29971107 (+)
uvrag uvrag other downstream 1835875 30011333 ~ 30113690 (+)
G169814 NA other downstream 1953074 30128532 ~ 30128932 (+)

Expression


Co-expression Network