LOC120543974 (flot2,LOC103376511)


Basic Information

Item Value
gene id LOC120543974
gene name flot2,LOC103376511
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 27605381 ~ 27625966 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777427.1
ATGGGGAACTGCCACACCGTTGGACCGAACGAGGCCCTTGTGGTTTCAGGTGGTTGCTGTGGCTCTGATCAGAAGACGTATATTGTGGGAGGCTGGGCTTGGGCCTGGTGGCTCATCTCTGACATCCAGAGGATAACGCTTGAGATTATGACCCTGCAGCCCAAGTGTGATGATGTAGAGACAGCGGAGGGTGTAGCTATTACTGTCACTGGGGTGGCTCAGGTGAAGGTGATGACAGAGAATGAACTGCTGGGTTACGCCTGCGAGCAGTTCCTGGGGAAGTCAGTCGTGGAGATCAAGAGTGTCATCCTGCAGACCCTTGAGGGTCACCTGCGCGCCATCCTTGGCACCCTAACCGTTGAGCAGATTTACCAAGACCGAGACCGATTTGCCACTCTGGTGCGAGAGGTGGCATCACCGGACGTCGGCCGCATGGGCATCGAGATCCTCAGCTTCACCATCAAGGATGTATATGATAAAGTGGAGTACCTGAGCTCACTGGGCAAAACGCAGACCGCTGCAGTACAGAGGGATGCAGACATCGGAGtggcagaggcagagagagacgcTGGCATCAGGGAAGCTGAGTGTAAGAGAGAAATGATGGATGTTAAGTTCTTAGCTGACACAAAAATGGCTGACTCCAAACGAGAGCTGGAAATGCAGAAAGCTTCCTTTAATCAGGAAGTGAACACAAAGAAAGCAGAGGCTCAGCTGGCGTACGAGCTGCAGGCGGCCAAAGAGCAGCAGAAGATCTGCCTGGAGGAGATCGAGATCGAGGTGGTGCAGAGGAAGAAGCAGATCACTATTGAGGAGAAGGAGATCGACCGCACTGAGAAGGAGCTGGTGGCCACCGTGAAGAGGCCGGCCGAGGCCGAAGCCTACAGGATGCAGCAGCTGGCTGAGGGTCAGAAGATAAAGACGGTGCTGACGGCGCAGGCGGCGGCCGACAAAATCCGCCTGATCGGTGAGGCGGAGGCCTCGTCCATTAAAGCGGTGGGGAAGGCCGAGGCTGAGAAGATGAGGCTGAAAGCTGAGGCCTACCAGCAGTACGGCGAGGCTGCCAAGACAGCTCTGGTCCTGGAGGCTCTGCCCTTGATTGCCAGTAAGGTGGCTGCACCCCTGTCCCGGACCGGCGAGATCGTCATGCTGAGTGGAGACGGCAGCCGCGTGTCTGGAGAGGTGAACCGTCTATTAGCTGAACTCCCGTGTCCGTCAACGCCCTCACCGGGGTGGATCTGACTAAGATCCCTCTGCTCCAGAGGATGGTCGGCACACAGTGCCAAGCAACCGTCTGATGAACCAGGCCAGAGACTCTAAATCCTTCAACATTTATCTGCCTCAAGCATGAAAATAGTTTTTTCAGCCTCTGGCCCCTTATGCGACTGCCTTTGACCAGAAACACTTGACACCAaacaagagttttttttttttttatatttttaagagGTTTTTAATTTTCTAAGGGAAAAACAAGCTGGGGCCTTATTTCTAAAGGACCAGACTATATGTATCTTCTGATGGATTTAGTTTTAGACACATTGAATCCTCATCACACTGCACTAGTTAGCCAGGATTATATGCTGCCAtcctgtccaatcagagttggTCCACTTTGAATCTGGTGGTGTTAAAATTTATTTTAGAAGGAAAAACACCTCAGTCTTCAATAGTTGGAGCTGGAAAGAGTACAAAAAATTAAGGCCAATTCTGAATATTGTTCTCTGCTCCAGAGCTGTTAAAGGGTCTGCCTCAAATTTGGGGTGCACCACTTCCCTGTCAGGTGTTCTGGCCTTTATTCACCTTGGGGGCAGAGTGTCCAGCCTCTGCCTCTTCACCCTCAAACAGAGCCCAGTTAGTGAAGTAACTTGCAGTAGACTGAGCCCGGTGTGAAATGGGCAGCTTTTATTTCCTCATTGcttttaaaactctttatacatttttttttttatagatgaaTTAACTCTAACTCA
>XM_039777428.1
CGCTACTCGTTGCTCGACTATCGAGCTTGGTTGGACTCATCGATAACTGAGGTGGAAAAAGACAGGAAAACAGTGTGTTTATaagtgaaatttgttttgtaagCGTCGAGTTGGTTTGTATACGTTTTTTTTCTGTAGGTAAAATGGGGAACTGCCACACCGTTGGACCGAACGAGGCCCTTGTGGTTTCAGGTGGTTGCTGTGGCTCTGATCAGAAGACGTATATTGTGGGAGGCTGGGCTTGGGCCTGGTGGCTCATCTCTGACATCCAGAGAATGTCTCTGGAGGTTATGACCATCCTCTGTCGGTGTGAGAATATCGAAACTTCGGAGGGTGTTCCCCTGGATGTGACAGGGGTGGCTCAGGTGAAGGTGATGACAGAGAATGAACTGCTGGGTTACGCCTGCGAGCAGTTCCTGGGGAAGTCAGTCGTGGAGATCAAGAGTGTCATCCTGCAGACCCTTGAGGGTCACCTGCGCGCCATCCTTGGCACCCTAACCGTTGAGCAGATTTACCAAGACCGAGACCGATTTGCCACTCTGGTGCGAGAGGTGGCATCACCGGACGTCGGCCGCATGGGCATCGAGATCCTCAGCTTCACCATCAAGGATGTATATGATAAAGTGGAGTACCTGAGCTCACTGGGCAAAACGCAGACCGCTGCAGTACAGAGGGATGCAGACATCGGAGtggcagaggcagagagagacgcTGGCATCAGGGAAGCTGAGTGTAAGAGAGAAATGATGGATGTTAAGTTCTTAGCTGACACAAAAATGGCTGACTCCAAACGAGAGCTGGAAATGCAGAAAGCTTCCTTTAATCAGGAAGTGAACACAAAGAAAGCAGAGGCTCAGCTGGCGTACGAGCTGCAGGCGGCCAAAGAGCAGCAGAAGATCTGCCTGGAGGAGATCGAGATCGAGGTGGTGCAGAGGAAGAAGCAGATCACTATTGAGGAGAAGGAGATCGACCGCACTGAGAAGGAGCTGGTGGCCACCGTGAAGAGGCCGGCCGAGGCCGAAGCCTACAGGATGCAGCAGCTGGCTGAGGGTCAGAAGATAAAGACGGTGCTGACGGCGCAGGCGGCGGCCGACAAAATCCGCCTGATCGGTGAGGCGGAGGCCTCGTCCATTAAAGCGGTGGGGAAGGCCGAGGCTGAGAAGATGAGGCTGAAAGCTGAGGCCTACCAGCAGTACGGCGAGGCTGCCAAGACAGCTCTGGTCCTGGAGGCTCTGCCCTTGATTGCCAGTAAGGTGGCTGCACCCCTGTCCCGGACCGGCGAGATCGTCATGCTGAGTGGAGACGGCAGCCGCGTGTCTGGAGAGGTGAACCGTCTATTAGCTGAACTCCCGTGTCCGTCAACGCCCTCACCGGGGTGGATCTGACTAAGATCCCTCTGCTCCAGAGGATGGTCGGCACACAGTGCCAAGCAACCGTCTGATGAACCAGGCCAGAGACTCTAAATCCTTCAACATTTATCTGCCTCAAGCATGAAAATAGTTTTTTCAGCCTCTGGCCCCTTATGCGACTGCCTTTGACCAGAAACACTTGACACCAaacaagagttttttttttttttatatttttaagagGTTTTTAATTTTCTAAGGGAAAAACAAGCTGGGGCCTTATTTCTAAAGGACCAGACTATATGTATCTTCTGATGGATTTAGTTTTAGACACATTGAATCCTCATCACACTGCACTAGTTAGCCAGGATTATATGCTGCCAtcctgtccaatcagagttggTCCACTTTGAATCTGGTGGTGTTAAAATTTATTTTAGAAGGAAAAACACCTCAGTCTTCAATAGTTGGAGCTGGAAAGAGTACAAAAAATTAAGGCCAATTCTGAATATTGTTCTCTGCTCCAGAGCTGTTAAAGGGTCTGCCTCAAATTTGGGGTGCACCACTTCCCTGTCAGGTGTTCTGGCCTTTATTCACCTTGGGGGCAGAGTGTCCAGCCTCTGCCTCTTCACCCTCAAACAGAGCCCAGTTAGTGAAGTAACTTGCAGTAGACTGAGCCCGGTGTGAAATGGGCAGCTTTTATTTCCTCATTGcttttaaaactctttatacatttttttttttatagatgaaTTAACTCTAACTCA

Function

symbol description
flot2 Predicted to enable ionotropic glutamate receptor binding activity and protease binding activity. Involved in several processes, including negative regulation of macromolecule metabolic process; positive regulation of NF-kappaB transcription factor activity; and protein localization to cell periphery. Located in several cellular components, including basolateral plasma membrane; cytoplasmic vesicle; and uropod. Part of flotillin complex. Colocalizes with cortical actin cytoskeleton.

NR:

description
flotillin-2a isoform X2

GO: NA

KEGG:

id description
K07192 FLOT; flotillin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777427.1 False 1973 mRNA 0.51 11 27605381 27625823
XM_039777428.1 True 2116 mRNA 0.50 11 27605381 27625966

Neighbor

gene id symbol gene type direction distance location
fam222ba fam222b,LOC102781587 coding downstream 24542 27548915 ~ 27580839 (-)
specc1 specc1 coding downstream 108379 27406845 ~ 27497002 (-)
adora2b adora2b coding downstream 199689 27389625 ~ 27405692 (-)
pigl pigl coding downstream 289823 27301352 ~ 27315558 (-)
ubb LOC107567755,LOC107588961 coding downstream 307525 27291939 ~ 27297856 (-)
dhrs11a dhrs11 coding upstream 11989 27637955 ~ 27658237 (-)
ggnbp2 ggnbp2,LOC102784373 coding upstream 33230 27659196 ~ 27666736 (-)
znhit3 NA coding upstream 67516 27693482 ~ 27698749 (-)
ca4a ca4,LOC104949315,LOC103363689 coding upstream 174247 27800213 ~ 27873238 (-)
LOC120544612 NA coding upstream 190241 27816207 ~ 27832205 (-)
G169236 NA non-coding downstream 1467 27602391 ~ 27603914 (-)
LOC120543973 NA non-coding downstream 8817 27595820 ~ 27596564 (-)
G169226 NA non-coding downstream 20457 27547868 ~ 27584924 (-)
G169218 NA non-coding downstream 77820 27526792 ~ 27527561 (-)
G169217 shpk,LOC102781293 non-coding downstream 79228 27524949 ~ 27526153 (-)
G169241 NA non-coding upstream 9630 27635596 ~ 27636019 (-)
G169255 NA non-coding upstream 87973 27713939 ~ 27716932 (-)
G169275 NA non-coding upstream 123339 27749305 ~ 27749558 (-)
G169289 NA non-coding upstream 164090 27790056 ~ 27794788 (-)
G169387 ssc4d non-coding upstream 537169 28163135 ~ 28203753 (-)
emc6 emc6 other downstream 86380 27515890 ~ 27519001 (-)
flrt1a flrt1,LOC104926332,LOC103360355 other downstream 664174 26870550 ~ 26941207 (-)
gng3 gng3,LOC107559409 other downstream 912340 26688879 ~ 26693041 (-)
G168964 NA other downstream 920425 26681514 ~ 26684956 (-)
ammecr1 ammecr1 other downstream 992664 26574929 ~ 26612717 (-)
pigw pigw,LOC107090330,LOC102785725,LOC102220786 other upstream 42715 27668681 ~ 27701551 (-)
gusb gusb other upstream 93033 27718999 ~ 27746458 (-)
LOC120544024 rnf43 other upstream 304573 27930539 ~ 28027777 (-)
LOC120544668 tspoap1 other upstream 421641 28047607 ~ 28122618 (-)
srrm3 srrm3,LOC103395181,LOC102790399,LOC102288945 other upstream 591277 28217243 ~ 28313133 (-)

Expression


Co-expression Network