LOC120544484 (msantd2)


Basic Information

Item Value
gene id LOC120544484
gene name msantd2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 32578097 ~ 32589328 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778275.1
TGAACGtcaccctccctccccccctccccttagCAACAGAGGCAACATGGCGGCGTCCAGTACCGCGGAGCATTCTCCAGAGATATCGACGCCGTTAAAGATACCCAAAACCGAGGTGCCATCCCCCGAGTCGGAAGACCTGAGTGACAGCAATCAATACCACTCCAATCCCTCGACACCTAACCGCTTCTCGCCTTTGAACGTGGGCTCAGGGACCGCGGGCCGGACGGCGGCCTCATCCTCCTCCAACAGCTTCACGGCTTGCCGAGGGATGTCGTGGACCCCGTCCGAGACAAACGCCCTCATCGCGGTCTGGGGCAACGAGAGGCTGACGGAGGCGAGGATGCAGCAGCTGGAGGTCGCAGGCACCGTCTTCTCCGGTAAGGCCCCCGGCCCTGCCATGTACGAGCGGGTGTCCAGAGCCTTGTCGGAGCTGGGATACGAGAGGACCCCGTCCCAGTGCAGGGAGAGGATGAAGACGCTGCGGCGCTGTTACAGCCGCGTGAAGGAGCACGGCATCGGCAAACGGAAGAGCAGCTACACTATAGAGCAGCTGGAGAAGGTGTTTGGTCAGGGAGGCTGGGACTCCCAGAGTTGTGCCCCGGTGCTGATCAACAGCAGCGGGCTGTATCAGGAGATGGAGTCTGATGGCAGCACCCTGGAAGACTTCTCCCAGGAGGACTGGTGCAACCAGGTGCTGGACTCGGCCTTCCAGGAGGGAGACATGGAGACTGAAGAAACCCAGGTGCCTAAAAACAGAGCTCTGCAGATTCAAATAGAGCTGACAGAACAAATCCAAAAAAGGGACACGATGCAGACTGTGACGCGTATCCTTGAGTCGGTGCAGCTGCAATGGGAGCCCTTCCAGACATGGACCGAGTTCTCCCGGCTCCACCTCTCCAACAAACTGGCCATCTTTGGCGTGGGCTACAACACGCGCTGGCGCGAGGACGTGCGCTACCACTACGCCGAAATCAGCTCGCAGGTGCCGCTGGGCAAGAGGCTCCGCGAGTACTTCAACCCCGAGAAGCCAGAGGGCCGCATCATCATGACCAAAGTTCAGAAGATGAACTGGAAGAACGTCTACTACAAGTTCCTGGACATTACCATCAGTGAGGCGCGCTGCCTGGAGCTGCACATGGAGGTGGACTGGATCCCGGTGTCCCAGTCCAGGGCAGCCGGCTGCAGCAAGGGCACATCCCACTACCTCCTCCCTGGGGACATCCCCAAGGCGTATGGACTCTACGCTATTGGCTACGAGGCAGTGGCATCCCCTCGCGACACGACTCACGTCTTTCCCCAGGGGGATGGTGAAGACCACAGTTCACCGCAGTGCTCCGAGAACGGGGAGCAAAGTCAGGCTGTTGGAGAAGGGGCAGAGAGATGTGACAGGACTGGGGCTAAAGTCACGTACTGCTACCTAGGCATAGCGGAGGACAGGACCATACAGCAGAGTCTCTTCCAGCACTTCCAGGGCTACGGCAAACACTATGTCCACCACGGGGTACCCTCCGCCATCACGCGTTTCCTGCAGGAGAACTGCCACGGCGACGTCACACAGAATGGGGAGGGAGGCGAGGACTCATCTCAACGTTTTGCTATTTACATAAAATACATTGAGGTGGAGCTGGACTTCCTCTCAGCAGGCTCCCTGGTGGAGTGCCTCGAAACTGCTGCAGGTTATTCCTTGAAATACAACAACAAAGAAACGTCGTAACTACATGATTTGTGTTTACTAAAGATATAATTAACAAGTCTTACAGCCCACGAGGCAACATGAAAGGTGACCAATTCTGTCTGTTATAAAGCATGGATGTGTGCAAGAGTCTGGCATATTTTTGCAGCCTTTTCAGCTCTA

Function

symbol description
msantd2 Orthologous to human MSANTD2 (Myb/SANT DNA binding domain containing 2).

NR:

description
PREDICTED: myb/SANT-like DNA-binding domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778275.1 True 1858 mRNA 0.57 4 32578097 32589328

Neighbor

gene id symbol gene type direction distance location
esama LOC103364812,LOC104951165 coding downstream 11055 32493060 ~ 32567042 (-)
LOC120544316 LOC102214061,LOC102298006,LOC103357892,LOC101063296 coding downstream 434010 32099217 ~ 32144087 (-)
vps26bl LOC104931657,LOC103357891,LOC100706835,LOC101482660 coding downstream 487656 32078976 ~ 32090441 (-)
LOC120543954 arhgap32 coding downstream 513387 31970880 ~ 32064710 (-)
arhgap32b arhgap32 coding downstream 610455 31917787 ~ 31967642 (-)
robo4 NA coding upstream 239987 32829315 ~ 32868069 (-)
tmem218 tmem218 coding upstream 286960 32876288 ~ 32884667 (-)
LOC120543965 NA coding upstream 796086 33385414 ~ 33388408 (-)
jhy NA coding upstream 1646577 34235905 ~ 34277162 (-)
hspa8 hspa8,LOC103356016,LOC102792298,LOC105921217 coding upstream 1688843 34278171 ~ 34282577 (-)
G170523 NA non-coding downstream 161896 32410272 ~ 32416201 (-)
G170521 NA non-coding downstream 172475 32405341 ~ 32405622 (-)
G170520 cfap58,LOC102788841 non-coding downstream 174649 32403214 ~ 32403448 (-)
G170519 NA non-coding downstream 178198 32396564 ~ 32399899 (-)
G170518 NA non-coding downstream 181585 32394989 ~ 32396512 (-)
LOC120544610 NA non-coding upstream 317030 32906358 ~ 32908784 (-)
G170626 NA non-coding upstream 472154 33061482 ~ 33061700 (-)
G170627 NA non-coding upstream 503700 33093028 ~ 33093318 (-)
G170673 NA non-coding upstream 911952 33501280 ~ 33505814 (-)
G170678 NA non-coding upstream 962892 33552220 ~ 33552511 (-)
LOC120543978 fez1 other downstream 86792 32443286 ~ 32491305 (-)
G170463 NA other downstream 375891 32201709 ~ 32202206 (-)
G170098 NA other downstream 1619599 30957501 ~ 30958498 (-)
LOC120543892 LOC103394800 other downstream 1727043 30846998 ~ 30851054 (-)
LOC120543890 LOC103370389,LOC108247974,LOC103394800,LOC106674904 other downstream 1747788 30737565 ~ 30830309 (-)
ntm LOC100703630,LOC102197934,LOC101488072,LOC102307721,LOC103141059 other upstream 979293 33568621 ~ 34100246 (-)
G170802 zgc:194989,hist2h2l,LOC107719244,LOC108277172,LOC103356012,LOC107574861,LOC108179079 other upstream 1719666 34308994 ~ 34309714 (-)
cblb cblb other upstream 2334045 34923373 ~ 35016119 (-)
LOC120575651 LOC105011014,LOC103356025,LOC103395028,LOC106603763 other upstream 3517486 36106814 ~ 36246233 (-)
LOC120575647 kirrel3,LOC106567547,LOC105011011 other upstream 3827595 36416923 ~ 36780232 (-)

Expression


Co-expression Network