LOC120547246


Basic Information

Item Value
gene id LOC120547246
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 10144098 ~ 10161023 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU248422
CACAACGCGGAGTCTGATCCACGCGCACGCTTTTCTTGTTGAATCTGTCTCTATATTAGGctatacatgtgtatatatttaggtGATTCTTGTTTTGTATATAACCTTAGCCCAATAAGTAagGGCCCAGCTGTCCCAGTGGAAGTTTAAGCTCTCTGAGCCGAATCGGAGGACACCGTCCCGGTGGTTCCCTTCAGAAACGGGAGGGGAGGACGGCGTGCCGCGCTGCAGCGGCTGCTGCCGTACATCAAAAACGAACGAGTGTCTAGATTGCAGCTGAAAGCGTCTTAAGTCCGGAGGGGCAGCCAGTGTCCGAGCCCTTCAAAGAACCTCCGTACGCTCACGACGTAGAAGTCGACGTTGTGAGTGAAGTCGGTGCAAATGTTGGAGTACGTGTCCACCAGAGTGCAGTAGAGGGCGGTCCCGCCTATGCTGATCACCACGGTAACcagacacagcagcagcaggatcAGACAGGAGTCTCCACCTACCTCATCTACAACGCTGTCccacttaaaggtccaatgtgtaggaatttctcccatctagcgttgagctcatatatcgcaatcaactctctcacaccacgcagttcaaagtaggtattacagctacggtagccttcacacttcaaaaagccggtctctggctcttttcaatatcctttttctttttctaggcgaagaagaagactcccgttcctgaaatttggatgtcgaatacgtgtggtcctccatgtttccttcttcaaacttaccgggccgggaagctacgatacccattagcagcaatagcagcacctgtgagtttatcatgtgacagcgaaaacgcgaatggcagagcagtatgtcccttaccgtctaccgtatttcaagatggcgcatgaatatggagcgtctaccccagttcatgcgaatgcaaataagccaaaaggaatactttgaattgatggtggtggtaaatattcacgaaaaaggacaagtttgtgaacgggcaacacagattttgataattaaCAACTAAAAACGTTACACACCGGACCTTTAACAACGCAGCTCCCACCGAacggaccaaaccactgtgaggtAAGGAAGGG
>XR_005637040.1
CAACACTGGCTCTTACAGCCGACTCATTCGCGAACGACCCATCACTACAGGCAGGCAGGGCAGACAGCAGTCCCTTCCAGCTCCTACCTCAGAACGCTTTTCTTGGCTTGTGTGGAGTCCCCCTTCTCAGATCCAGGACCGGATTCTCCGCAGCGTTGCACGGCAGTGGGAGTGTCACCGAAAACTGCCCATTTCTGTGACGTCCCGTTGTGTTCCGGTTTCccgtttcctgtacgggactctcacaccgcttCAAAACACAACGCGGAGTCTGATCCACGCGCACGCTTTTCTTGTTGAATCTGTCTCTATATTAGGctatacatgtgtatatatttaggtGATTCTTGTTTTGTATATAACCTTAGCCCAATAAGTAagGGCCCAGCTGTCCCAGTGGAAGTTTAAGCTCTCTGAGCCGAATCGGAGGACACCGTCCCGGTGGTTCCCTTCAGAAACGGGAGGGGAGGACGGCGTGCCGCGCTGCAGCGGCTGCTGCCGTACATCAAAAACGAACGAGTGTCTAGATTGCAGCTGAAAGCGTCTTAAGTCCGGAGGGGCAGCCAGTGTCCGAGCCCTTCAAAGAACCTCCGTACGCTCAC

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
TU248422 True 1096 lncRNA 0.49 5 10145135 10161023
XR_005637040.1 False 602 lncRNA 0.54 5 10144098 10148746

Neighbor

gene id symbol gene type direction distance location
LOC120547052 NA coding upstream 147547 9994881 ~ 9996551 (+)
LOC120546401 NA coding upstream 210179 9931356 ~ 9933919 (+)
LOC120547170 LOC103373899 coding upstream 239173 9893057 ~ 9904925 (+)
LOC120546400 NA coding upstream 257376 9882134 ~ 9886722 (+)
snap25a snap25,snap25a,LOC107599071,LOC107698362 coding upstream 297247 9788067 ~ 9846851 (+)
hnrnpub hnrnpu coding downstream 49113 10210136 ~ 10220742 (+)
fbxo16 NA coding downstream 221724 10382747 ~ 10394227 (+)
vsnl1a vsnl1,vsnl1b,LOC101070256,LOC102783710,LOC101471140,LOC106533326,LOC106921729 coding downstream 449857 10610880 ~ 10661241 (+)
tdrd6 NA coding downstream 509094 10670117 ~ 10692564 (+)
ints9 ints9 coding downstream 547272 10708295 ~ 10723562 (+)
G183421 NA non-coding upstream 26813 10116919 ~ 10117285 (+)
G183419 NA non-coding upstream 27323 10116505 ~ 10116775 (+)
G183411 NA non-coding upstream 33230 10110504 ~ 10110868 (+)
G183380 NA non-coding upstream 98993 10043978 ~ 10045105 (+)
G183363 NA non-coding upstream 167294 9976596 ~ 9976804 (+)
G183543 glrx5 non-coding downstream 489249 10650272 ~ 10728507 (+)
LOC120547320 NA non-coding downstream 595477 10756500 ~ 10760798 (+)
G183597 NA non-coding downstream 659441 10820464 ~ 10898613 (+)
G183610 NA non-coding downstream 742668 10903691 ~ 10912107 (+)
G183615 NA non-coding downstream 760802 10921825 ~ 10922055 (+)
LOC120546402 NA other upstream 31463 10111070 ~ 10112635 (+)
il17a/f3 NA other upstream 541750 9595376 ~ 9602348 (+)
pnocb LOC103362991 other upstream 639824 9469609 ~ 9504274 (+)
LOC120547211 hmbox1 other upstream 819235 9296060 ~ 9324863 (+)
LOC120547311 NA other upstream 1011320 9129535 ~ 9132778 (+)
cdc42bpab fzd3,LOC103374788 other downstream 75926 10236949 ~ 10399812 (+)
G183540 sf3b6,pm14,SF3B6 other downstream 461713 10622736 ~ 10666472 (+)
ches1 foxn3 other downstream 1603120 11764143 ~ 11869192 (+)
bcl11bb LOC103368061 other downstream 2546195 12707218 ~ 12739384 (+)
LOC120546167 NA other downstream 2785976 12946999 ~ 13008411 (+)

Expression


Co-expression Network