snap25a (snap25,snap25a,LOC107599071,LOC107698362)


Basic Information

Item Value
gene id snap25a
gene name snap25,snap25a,LOC107599071,LOC107698362
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 9788067 ~ 9846851 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781477.1
tgaAGAAGAAGTGAGGAAGAATCAGCCGACGCGCAGTGCCTTTGCAGCATTCCAGTcatagacagagagaggctGGTATAACAGGGTTCGCTGTTAATAGACGCAGACATTTCCTCCCATACTGACTGCGGGACACCCACAACAGGCACAGCCTTCCCCGATTCCTCACTAGGATCTTCTCTTCCCTGTTGGAGACCTTCTCCACCCCCCACATCCAGCAGCCATGGCAGATGACGCAGACATGCGCAATGAGCTGTCAGACATGCAGCAACGTGCCGACCAGCTGGCAGATGAGTCTCTGGAGAGCACTCGTCGCATGCTGCAACTGGTGGAAGAGAGCAAAGATGCCGGCATCAGGACTTTGGTTATGTTGGACGAGCAGGGAGAGCAACTGGAGCGCATCGAGGAGGGAATGGACCAAATCAATAAGGACATGAAGGATGCAGAAAAGAATTTGAACGATCTAGGGAAATTCTGTGGTCTTTGCTCCTGTCCATGTAACAAGATGAAGAGCGGAGCCAGTAAGGCCTGGGGGAACAACCAGGATGGGGTGGTGGCCAGCCAGCCCGCCCGCGTGGTGGACGAGCGCGAACAGATGGCCATCAGCGGAGGCTTCATCCGCCGagtaACAGATGATGCCCGGGAAAATGAGATGGACGAGAATCTGGAGCAGGTGGGCGGTATCATCGGTAACCTGCGCCACATGGCCCTGGACATGGGCAACGAGATCGACACCCAGAACCGCCAGATCGACAGGGTCATGGAGAAGGCTGATTCCAACAAGACCAGGATTGACGAGGCCAACCAGCGCGCCACAAAGATGCTGGGCAGTGGCTAAACGCCGTGCGCCCCGAGCGCGATGGTCCCGGCGTCCCGTGCCGCACATCTACAGGCGCTGATATGCTTTCATCATGGTATTGACCTTCTAGGtttgcacacatgcacatatcacctcccctcccccattgtaaatgttgttctgtgtgtcGTCTGTCGAGCTTTTTCAAGATGATTGTCCTCGTAAAAAGATGATTTCTTATACTCCGTATATCATTCTTTCCAAAGGTTGTATATAGTGCTGACTTGATGGCTCTCTAGCTCACCTGTGAAgtttttaattctctttatcagaatatatatatatcatatattatcatatatcatatataatatatatatatataaaagtacaCTGCTCTGGATGACAAGTATATAATAGGAATGCTATACaagctgtttgtttttattctttttccttttcagtatCTCAGTATCGTCTTAGTAAAACTGTGTCATTCCATTTAGGCTACTGTCATGCTCCTCATTTTGGTGTTGTCAGGACAAAAAGATTGAAAACAAGATCATGATTTCCTAAGGGACGGTGCAGATGGACGGGATATTGCAAAGAGCACTTACAATCAAAAGGCATTCGTTGGTACATTTTCCTTCATCGCAATCATACTGAGTTCTTGTTTAGACAATGTGCAACTAGACTCTCCGTAGCTGTATTAGACATTGCATTCCAAGTGATGTGACTTGTGCGTTCTCTGCATGACAAATGGTAGATTTTAGTCTTATAAATAAAACCTGtctgaaaaatatatataaaaaatgattACATGGCAGTAgcaaattgacaaaaaaacgCATGCTCTGTATTAGGACACAGTTGATCGTTCCATACTCCTGCAAGTTTGCAATAGTGCCACTCTTTTTGTCTCGATATATTTACCGACTGTGACCATCTTGTTGTACAATAATGCAAAAAGGGATCAAAAAAGTGAGATAAGGATGAAAACAATGTGAGGACTTGGGGTTGtattgcaaaaaaataaataaaactatgacCTGTTTTCTAAATGATTATGCAGTTCAGTGATGAAGATGTTGATTTATGTGCTGAAAGATGAGGACTGGTTGTGTACTGTAACATAGGTTTTGGATGCTCTGAAAAAgatgaaaataaacatttgcaaTGTAAAGCAAAGACGCATATTTCTGAGAGACCTTACTTTTATAAGAAGACTGTATCTGTAAGTTTATTCTCCCCCGTGTGGTTTgttattggttaaaaaaaaaattatgataataTTGAATAACAATAGCTATACTctgatacaaaaaaatacatacaaaaggttttttttttgttttgttgcttctGTACTTTAGAGCTATGCACACCAAATCGCCAAAATGTGGAGTAGTTAGATTAAGGTATTTAAAATACCTAGACCTGAATGACACAATAGGTTGAACCGTGAGATTGATGTCCTCAACGCATGTAATATTAAAGACCCCTCTCTGTATCCTGTCAGTGTGTGAAGTGGTGGACATTTTGTAGCTAGCTGAATTGATTAAAAGTAATAAACCCTA

Function

symbol description
snap25a Predicted to enable SNAP receptor activity and syntaxin-1 binding activity. Acts upstream of or within locomotory behavior and mitotic cytokinesis. Located in plasma membrane. Is expressed in head; nervous system; and optic vesicle. Human ortholog(s) of this gene implicated in Down syndrome and congenital myasthenic syndrome 18. Orthologous to human SNAP25 (synaptosome associated protein 25).
snap25 Enables syntaxin-1 binding activity. Predicted to be involved in SNARE complex assembly; synaptic vesicle fusion to presynaptic active zone membrane; and synaptic vesicle priming. Predicted to act upstream of or within several processes, including associative learning; neurotransmitter secretion; and regulation of synaptic plasticity. Located in cytoplasm and cytoskeleton. Part of SNARE complex. Colocalizes with BLOC-1 complex and vesicle. Implicated in Down syndrome and congenital myasthenic syndrome 18.

NR:

description
PREDICTED: synaptosomal-associated protein 25-A

GO:

id name namespace
GO:0000281 mitotic cytokinesis biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031083 BLOC-1 complex cellular_component
GO:0030054 cell junction cellular_component
GO:0031201 SNARE complex cellular_component

KEGG:

id description
K18211 SNAP25; synaptosomal-associated protein 25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781477.1 True 2376 mRNA 0.43 8 9788067 9846851

Neighbor

gene id symbol gene type direction distance location
ankef1a NA coding upstream 33434 9733088 ~ 9754633 (+)
emilin1a emilin1,LOC103372345 coding upstream 55413 9686657 ~ 9732654 (+)
mcm3 mcm3 coding upstream 205444 9567431 ~ 9582623 (+)
elp3 elp3 coding upstream 340826 9403109 ~ 9447241 (+)
tlr5a NA coding upstream 640423 9135335 ~ 9147644 (+)
LOC120546400 NA coding downstream 35283 9882134 ~ 9886722 (+)
LOC120547170 LOC103373899 coding downstream 46206 9893057 ~ 9904925 (+)
LOC120546401 NA coding downstream 84505 9931356 ~ 9933919 (+)
LOC120547052 NA coding downstream 148030 9994881 ~ 9996551 (+)
hnrnpub hnrnpu coding downstream 363285 10210136 ~ 10220742 (+)
G183312 NA non-coding upstream 15604 9772220 ~ 9772463 (+)
G183309 NA non-coding upstream 29677 9758087 ~ 9758390 (+)
G183259 NA non-coding upstream 244852 9532524 ~ 9543215 (+)
G183255 NA non-coding upstream 260734 9521823 ~ 9527333 (+)
G183249 znf395 non-coding upstream 279586 9505448 ~ 9508481 (+)
G183320 NA non-coding downstream 644 9847495 ~ 9848790 (+)
G183327 NA non-coding downstream 29230 9876081 ~ 9876412 (+)
G183350 NA non-coding downstream 87663 9934514 ~ 9935596 (+)
G183363 NA non-coding downstream 129745 9976596 ~ 9976804 (+)
G183380 NA non-coding downstream 197127 10043978 ~ 10045105 (+)
il17a/f3 NA other upstream 185719 9595376 ~ 9602348 (+)
pnocb LOC103362991 other upstream 283793 9469609 ~ 9504274 (+)
LOC120547211 hmbox1 other upstream 463204 9296060 ~ 9324863 (+)
LOC120547311 NA other upstream 655289 9129535 ~ 9132778 (+)
LOC120546611 LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678 other upstream 750374 9020960 ~ 9037693 (+)
LOC120546402 NA other downstream 264219 10111070 ~ 10112635 (+)
cdc42bpab fzd3,LOC103374788 other downstream 390098 10236949 ~ 10399812 (+)
G183540 sf3b6,pm14,SF3B6 other downstream 775885 10622736 ~ 10666472 (+)
ches1 foxn3 other downstream 1917292 11764143 ~ 11869192 (+)
bcl11bb LOC103368061 other downstream 2860367 12707218 ~ 12739384 (+)

Expression


Co-expression Network