LOC120546361


Basic Information

Item Value
gene id LOC120546361
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 12589905 ~ 12598724 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781280.1
AGCCACAGGGGGACTTCTCAGctatgtactgtaaatgaaaagCCAGCCTGTCAGGACGTCCCTCATTcctggataaaaaaaagaagaagtgggTCTCTCTCCTCTTGGTGGCACAGCAGCAACCCCGGGTTTATAAGACCAGTGCTCTAAACACTGAGCTATGCCGTGCCCGAACTAGCACTATTATTAGAACAATACAAATTTGAAGGTGTGAAAGGTGTTCCGGAAGTTGTTTTGCCGCAGTTATTGAACTACTTCACGAACGAGTCTAATAACTTTGGACTAGCTTTCTGGCGGTCTAACGTTACAGTCTATTGAGCTTGAGTTACCAAAATGCCAGTTTTCCATGTATTTTTGAGCTGGACTGCTTTGTTTCTGCTCTTTCTGATTTTCATATCGTTTCTTGGTTATTGCTTATATGTTAAACACATTCATACGAAATATGACCACATACCCGGACCCCCGAGAGACAATTTTCTCTTCGGACATTCACCAACCTTTTTAAGGTTAATGAAAAAAGGCGACATCATTCACGACACGTTTCTGGAATGGGCCGAGACATATGGGCCTGTTTGCAGAATAAATGTTCTACATTACGTTTTGCTCATTGTGACCTGCCCAAAAGCGACCAAGGAGATCCTGATGTCCCCAAAGTATCCAAAAGATAGATTCTACAGCAGAATCTTCAACCTGTTTGGTCAAAGGTTCCTAGGTAATGGCCTGGTAACAGCAAGAGATCATGAGAAGTGGTATAAACAGCGGCGGATCATGGACCCTGCGTTCAGCAGCTTGTATTTGAGAGGTCTAACCGGCACCTTCAACGAGAGGGCAGAGAAACTGATGACTACACTTACAGATGTCGCTGATAACATGACAGAGGCCAGCATGCTCCACCTCATGAACTCTTTTACTCTTGATGTTATTGCTAAGGTTGCATTTGGAGTGGATTTAGACCTGCAGGAGGATAGATCAATTTTCCCTAAAGCCATCGAGACATGTCTGAAAGGGATGCTCTACAAAGCCAGAGACCTCTTATATGAATACAAGCTGAAGAACCGACCATTCATTAAGAAAGTGAGGGAAGCTTGCCGCCTGCTGCGTACAACTGGAGCTAAGTGGATTAATGACCGAAAGACTGCCATGCAAAACGGCGATGACGTCCCCAAGGACATCCTCACACAGATCATCAAAACAGCCGGCAAAGAGGAAAGCATGACTAAAGAAGACGAAGAGTTGATGTTGGACAACTTTGTGACATTTTTCATTGCGGGGCAAGAAACAACTGCTAATCAACTGGCTTTTTGCATCATGGAACTTGGGAGACATTGTGACATTCTGGAGAAAGTGAAGAAAGAGGTGGATGATGTCGTTGGGATGAAACAGGAGATCAGTTATGATGATCTGGGACAACTGGTCTACCTCTCACAGGTGCTGAAAGAGACTCTGAGGATGTACTCGACAGCTCCAGGCACATCTCGTGCAATAGTGGAAGATATTGTCATCGATGGAATCCACATACCGGGAGGAGTCTCATGTTTTTTCAGCTCCCATGCGACTCAGAGAATGGAGAAATTCTTCAAGGACCCGCTGACATTTGATCCAGACAGATTTCACCCAGATGCTCCCAAGCCGTATTATTGCTACTTCCCCTTTGCACTCGGCCCACGCTCATGCCTAGGACAGAACTTTGCTCAGATGGAGGCTAAAGTGGTGATGGCCAAGCTGCTCCAGAGGTTTGACTTCACCCTTGTTCCGGGACAGACCTTTGATATAATGGACACTGGCACACTCAGGCCAAAGAGTGGAGTGGTGTGCTCTGTCAGACACAGGGATCAAAACAAGTAAATGTCTTACAGGGTCGTATAACATGAGAAGAAACAAAAATGGTTCACTCCTGCCTTAGCCAAAAGCATCTTATGCTGCAGAgttcttttatcacttttctgtGAATGTCTAGCCTTTATATAGAACATAGTATTATCAGTGCTTGTTTTAATGAAACAAACAGTATATCCACATGCAGTTATGAGGATGAATTGCCCCTTGTGGCATACAGTTTTCTGTATCTGTTATTAACGACCACTAATAAGCATATGGGGAAACAAACACTTTGCCTTCTGTTATTAGTTattaactttgtttgttttgcacTTCAATAAActaataattaatttaa

Function

GO: NA

KEGG:

id description
K07440 CYP46A1; cholesterol 24-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781280.1 True 2176 mRNA 0.44 15 12589905 12598724

Neighbor

gene id symbol gene type direction distance location
LOC120546360 NA coding upstream 813 12583304 ~ 12589092 (+)
ism2b ism2,LOC104967641 coding upstream 15555 12560298 ~ 12574350 (+)
sptlc2b sptlc2,LOC103357434,LOC100704591 coding upstream 30701 12540595 ~ 12559204 (+)
snw1 snw1,LOC102781075 coding upstream 63766 12513600 ~ 12526139 (+)
LOC120546813 cep128 coding upstream 586021 11889996 ~ 12003884 (+)
LOC120546363 NA coding downstream 18983 12617707 ~ 12629854 (+)
LOC120546362 NA coding downstream 33289 12632013 ~ 12638525 (+)
ccdc85cb ccdc85c coding downstream 41932 12640656 ~ 12690800 (+)
agbl5 agbl5 coding downstream 290537 12889261 ~ 12907305 (+)
selenoi selenoi coding downstream 310243 12908967 ~ 12922556 (+)
G183868 NA non-coding upstream 84782 12504685 ~ 12505123 (+)
G183866 NA non-coding upstream 109376 12480307 ~ 12480529 (+)
G183825 NA non-coding upstream 411055 12174579 ~ 12178850 (+)
G183762 NA non-coding upstream 702768 11886595 ~ 11887137 (+)
G183735 NA non-coding upstream 930014 11659672 ~ 11659891 (+)
G183890 NA non-coding downstream 30565 12629289 ~ 12637536 (+)
G183891 NA non-coding downstream 40594 12639318 ~ 12640078 (+)
G183896 ccnk non-coding downstream 102444 12701168 ~ 12703242 (+)
G183933 NA non-coding downstream 147360 12746084 ~ 12747667 (+)
G184000 phip non-coding downstream 572198 13170922 ~ 13172244 (+)
ches1 foxn3 other upstream 720713 11764143 ~ 11869192 (+)
G183540 sf3b6,pm14,SF3B6 other upstream 1923433 10622736 ~ 10666472 (+)
cdc42bpab fzd3,LOC103374788 other upstream 2190093 10236949 ~ 10399812 (+)
LOC120546402 NA other upstream 2477270 10111070 ~ 10112635 (+)
il17a/f3 NA other upstream 2987557 9595376 ~ 9602348 (+)
bcl11bb LOC103368061 other downstream 108494 12707218 ~ 12739384 (+)
LOC120546167 NA other downstream 348275 12946999 ~ 13008411 (+)
G183994 phip other downstream 546751 13145475 ~ 13247416 (+)
LOC120546706 wdcp other downstream 869511 13468235 ~ 13474159 (+)
LOC120546742 plcb1 other downstream 1425760 14024484 ~ 14140769 (+)

Expression


Co-expression Network