LOC120546930


Basic Information

Item Value
gene id LOC120546930
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 20672237 ~ 20683032 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636998.1
TCTAGCCAGGTTGGCCATTGTTAGCACTACCAGTTGATAGCAATGCATTTTGTGGTATTTTGCACGTGCAAACACCGTAGCAACATGTACACAGATAGAAGATCGACAGTAGCCTACTGTGTTTTCGGCTGATTTAATGAGAGAAAAACAATGCAGTGCTAAAAACAGTATATTCATACATATATGTTACTACTGTTGATGctcggagcagccatgttggattttaagGTCGGGGCAAGTTCTTTGGTCAGGGTTGGTGCGGTTCTCCCGAACTTCCGAGTGGGAAATCCGACTTCAAGGGGTGTTCCAAATAACATTTCCGACCAGGAACCGTGCTTTCCAGTTCAACTGAAATGCAGCATCAAAACGCGCGTCGGTCGGTAACAATATGTCAATGGTAACAATCAAGGATCCTGCGTCATCTTGGAATATATAATTGATTTACGCCTCTGAAATCCTGGATCAGCAATGAAGGCACCTCAACTCTGCCCCACTCTCCTCAGTCAGTTGGACGTTTTTCTGAAGAAAGGTGGCAAGACCGTAGCGACCCTTGTTCCATTCAACTCCAAACTTCAACCAACACAGATCTTGCTGTAAGGTGTTTAAGACCAGACCCactacacatgcatgcacaaGTGACAATGGAAGCACTGTGCACTGGCATCAGCTGAACCAGAGCTGCCAGCCTTGTCTCCTCTACACACTCTATTTTCTGCTGACGAGGGCCAAGCCAAAGTGCAAAAGTGGAACAAACACCTAAATATAACAAAAACCTGTTTACTGCCCCATAATCAGCAATGTGCTCATGTGTTTAGTCCACATTTACACAATGCATGGCTGTGAGTGGGTGCATGTTAGAATTTTTACTTGAATTAGGCTAACAAACTTAGCTTATATGTTGTGTGCTTTGATGCGACACAAAGCTTTGTTTagctgtgtgtagttgtgtgccTGAATATTGTCCTGGTGTATTGCAAGTCTATAGCTTTGGGGCTTATGAGTTCTTTTCTggtatatacagtagcctatgtGTTCAGTCTTTCAATTaactattaaaaacaacatCTGCTTTGGAGAATTCCTTGTCAAGCTCTGAATCCTGAAGCAGCAAAGAGGCTTGAAGAACCATTTAATATAGGCTCCTGCTGCCACTGAA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636998.1 True 1156 lncRNA 0.43 4 20672237 20683032

Neighbor

gene id symbol gene type direction distance location
grm1a grm1,LOC100701745 coding downstream 58429 20580127 ~ 20613808 (-)
LOC120546714 rab32 coding downstream 118404 20536868 ~ 20553833 (-)
adgb LOC104954516 coding downstream 137964 20490465 ~ 20534273 (-)
stxbp5a stxbp5,LOC103360418 coding downstream 186648 20376495 ~ 20485589 (-)
sash1a sash1,LOC102791441 coding downstream 431524 20068225 ~ 20240713 (-)
utrn utrn coding upstream 3185 20686217 ~ 20874744 (-)
trnal-uaa_20 NA coding upstream 194832 20877864 ~ 20877946 (-)
LOC120547337 NA coding upstream 200105 20883137 ~ 20885504 (-)
LOC120546146 LOC103355020,LOC104928884,LOC104962358,LOC101075501 coding upstream 203557 20886589 ~ 20889736 (-)
zbtb2b zbtb2,LOC104964770,LOC102290046 coding upstream 298763 20981795 ~ 20989362 (-)
G186018 NA non-coding downstream 43378 20628660 ~ 20628859 (-)
G186004 NA non-coding downstream 109904 20536106 ~ 20562333 (-)
LOC120546243 NA non-coding downstream 298487 20248660 ~ 20373750 (-)
G185901 NA non-coding downstream 689096 19982748 ~ 19983141 (-)
G185891 cdc40 non-coding downstream 748780 19921256 ~ 19923457 (-)
LOC120546177 NA non-coding upstream 476339 21159371 ~ 21165989 (-)
G186148 myct1,LOC103355010 non-coding upstream 478205 21161237 ~ 21162894 (-)
G186130 NA non-coding upstream 485477 21168509 ~ 21172624 (-)
G186228 NA non-coding upstream 592887 21275919 ~ 21325593 (-)
G186271 NA non-coding upstream 754704 21437736 ~ 21469376 (-)
G186006 NA other downstream 104758 20562437 ~ 20567479 (-)
ccdc167 ccdc167 other downstream 822433 19846958 ~ 19849804 (-)
LOC120546212 fam150b,LOC104941953,LOC100704438 other downstream 1019310 19648527 ~ 19652927 (-)
LOC120546238 efr3b,LOC101073163 other downstream 1317921 19334055 ~ 19354316 (-)
LOC120546223 LOC102213764,LOC101481591 other downstream 1764983 18904537 ~ 18907254 (-)
syne1a syne1,LOC102291171,LOC103355013,LOC102194633 other upstream 329360 21012392 ~ 21154812 (-)
LOC120547346 NA other upstream 489809 21172841 ~ 21173006 (-)
LOC120547366 NA other upstream 492306 21175338 ~ 21175528 (-)
si:ch211-51e12.7 NA other upstream 543934 21226966 ~ 21236529 (-)
armc2 armc2 other upstream 643224 21326256 ~ 21348649 (-)

Expression


Co-expression Network