LOC120548303 (usp54,LOC106455943,LOC108247408,LOC104941643,LOC107104721)


Basic Information

Item Value
gene id LOC120548303
gene name usp54,LOC106455943,LOC108247408,LOC104941643,LOC107104721
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2268828 ~ 2316402 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU259648
gtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggtttgaGGAGAATGATGTCAGGATCTGGACGGTCCAAAACACCAACGGGCTGAGATTGAGAGACACGCCTACAGATCACCAGTTACACCTCATAAGCCTCCGTCTGGTGAAGACGAGAGCTACAGTGCAGCCAACCTGCGGCGCCTCGCCCGCAGCCTGAGTGGAACGGTCATCGGGTCCCGACCCCAAAACCTCGGCTCCTCCCACAGCTGTGAGCCCTCTGTGTCCCTCAGacactcctcctcttcctcctccctcctccgtCGCCCCAGcaacccctcctccccctcctccactACAGATCCCTCCCTCCATCACCTCCTCCGTCACCTCCCCCCCTTGCAGACACCCCGGCCCCCGACGGAGGGCCTCTCCTCCTGGGGACACTCAGGTAACAAGCTACCCTACacccccacacatcacaccTCCACCTGCCATCTTTGATGCCTTAATTCCacctttttgttgctttaaGGGGAGAAACTGAGGGTGGGtaggacaaaaaaacaaactaatagagtattaggggaccactaaggtctatataaaagagacttcagat
>TU259649
GTTCCTCTCTGTTCTGTTATTGCTGTGCTCTGCTAACACACTCCCTCTCGGTCTCTCTGCTGGTTGTGAAAACAAGGATATCCCTCTATTGTTCACCAGTCCAGCTGGACAGAACCGAGGGTGtggtcagagacacacacacagtaacacacacacacacacagacacacacagacacacacagacatgcacacactggaacacacacacacacacacacacacacacgcacatacacagcCGGCACTTTTGCCCAcacatctctttctttctcttgcacaaacacacatttttttcactcACTGAGCGTTTGGCGGTTGACAGAAATGTTGGCGGTTTTGGATTGCGGCACGTCCTCTCAGATCTGAGCCGATCAGGAGGTGAATGTggactttattcttgttttttgggggggaaatggAGGAAAGGTTGAAATAACAAGCGGGAGGATTTGTGTCGCGCAGACGGGAGAACAGGAAGACGACGTTTTCTCTCTCCCAGATTTACCTTCTGATTGTGTTTTTCGAGATCGGTCCCAAGTGGAAGGACGTTGTTTCTCGCTGCATCAAGGGCCACTACcagccgctgctgctgctctacGCTGACCCGCGGGGGACGCCGGTGTCGGCCCAGGACCTGCCCTCGCGCTTCCCCCTCCACAGCCTCAACAAGGCCTGCTACGACAGCGAGGACTCGGGTAACTACAACACAGCTAGGAGTCGTAGTAGTAGCACAACCGCAAACGTTCAGGCCGCGAGCAGTCGATCTCCAGCGACACTCGCACCGATTCGTCCACGGAGAGTTCGTCGTCCCGACAGCCCTCCCACTCGCACCATGAGTCCCTGGCCAGCCACTACTCCTCCGACTCCCAGGGAACCGTCATCTGCACCGAGCGCGCCGACGGACCGCTGCACGCCTCGCTCGGCAGCCTGGAGACCATAGGTGAGACATTAAAGGAGCAGCAGGTTCCTCGTCATCTCCCCAaaccctccttctcctcctcctcctcctccttttcttcctcctccagtCGTCTGCGAGACTTTAAGGAGACGATGAGCAACATCATCCACAGCCGCccgctctcctcctcttcctcctcctctctgcccgCGGCCGTCCTCGCCTCTGACATCACTTCCTCCTCCAAAAACAACGCCAACAACCGCCACCACGAGGGCTACGTGGCGTCCTCTCCCTCAGCCGGTGCGTCCCTGGACTGGGACGCCGACAGTACCGGCAGCGAGTCCATGTCCAGGTGCACCGGCAGCGAGTCCATGTCCAGGTGCACCGGCAGTGAGTCCATGTCCAGGTGCTCTGCTGGTGCGTCCCGGGACTGGTTGGCGGACAGCACTGGCAGTGAGTCCATGTCCAGGTGCTCGGGCGGTTCTGGGCCCGGGCCGGGGCCGGGGTCGGGGGGGTACCGGCCTGCGTGGCGGCCGCGCAGGGAAGCGCTCAACATCGACAGCATCTTCACCCGagagaggcgGCGCTCGGCTTCAATCCCCGACCCAGCAAGTACCTGGACCTGGATCAGCTGCAGATCCaaggtAAAGGTGACAGCTTTGAGAGGTGTGTGTCGGAGGCGGAGCTTCTGCTGGACCAGTCGGTGCGTCTGGAGCAGGCAGGAGAGGTCGCCGCAGCGCTGTCATCGGTCAACGAAGCCGTCTtgaaAAGCCTCTCTCGCTCCAAATTCttctgacagagagacagggcgACCAATCAGCTTCCAGTCTGGACCAGCAGGCCCCGCCTCTCTCCCCCTGCCTCGTTAAGCCCCTCCCTCCAAAAATGACCTCACTTTCGGACCTTCCCTCCGGCCCCGTGGCCCCTACAGGTTCACCCAGGGAGGACGGCAGGACCGGAGGCCCCTGCTCTCGCTTTGGGAAACCCCCGACAGAGGTGGCTCCTCCCCCTCCACCTGAGGAGGCGGAGCTTCCCTCCCATTGGCCCCGAACGCCTTCCGTCTCTATCCTAGCACTGGCCCCGCCCCCTTCACCTGTTCACCCCATCGACAGGAGTCACGTGAGGACGGAGGAGGCGCCATTTTACCCCCGACAACCCCCGACAACACCCCTTGCGACTTCGTTCCCAACACGCAGTTGGTCCTGCTTACACCCGGCTGATGTCGTTGATTCTCCCGTTGACCCGCCAGTTGTCTCGCCAGTCGTCTCgccagtatctcacaaaaATTCCCCCCCGTCCCCTGGCCAGGACTTCCGAGCGGCGCTGCCCGTGGAGCGCTGGGCGGAGAACGTCAACAGATACTACGGCTCCCAGAGGGCAACGGGCGGAGAGGCATCGCACGGCGAGGAACTGTCGGAGCTGGAGTCTCTGTACCAGGCCAGCCTGCTGGCTCCCAGCATGCACCGGGGCAGCCGAGGAGTCAGTCCTCAGCCGACAAGCAACAAACAAGgtttgaGGAGAATGATGTCAGGATCTGGACGGTCCAAAACACCAACGGCTGAGATCGAGAGACACGCCTACAGATCACCAGTTACACCTCATAAGCCTCCGTCTGGTGAAGACGAGAGCTACAGTGCAGCCAACCTGCGGCGCCTCGCCCGCAGCCTGAGTGGAACGGTCATCGGGTCCCGACCCCAAAACCTCGGCTCCTCCCACAGCTGTGAGCCCTCTGTGTCCCTCAGacactcctcctcttcctcctccctcctccgtCGCCCCAGcaacccctcctccccctcctccactACAGATCCCTCCCTCCATCACCTCCTCCGTCACCTCCCCCCCTTGCAGACACCCCGGCCCCCGACGGAGGGCCTCTCCTCCTGGGGACACTCAGGTAA
>XR_005637165.1
GAGTCGGTCCTCAGCCGACAAGCAACAAACAAGgtttgaGGAGAATGATGTCAGGATCTGGACGGTCCAAAACACCAACGGGCTGAGATTGAGAGACACGCCTACAGATCACCAGTTACACCTCATAAGCCTCCGTCTGGTGAAGACGAGAGCTACAGTGCAGCCAACCTGCGGCGCCTCGCCCGCAGCCTGAGTGGAACGGTCATCGGGTCCCGACCCCAAAACCTCGGCTCCTCCCACAGCTGTgtat

Function

symbol description
usp54 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination.

NR:

description
inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU259648 False 656 lncRNA 0.56 4 2311972 2316402
TU259649 True 2810 TUCP 0.61 11 2268828 2316235
XR_005637165.1 False 250 lncRNA 0.57 3 2309292 2312863

Neighbor

gene id symbol gene type direction distance location
LOC120548117 LOC103362069,LOC108229017,LOC106525817,LOC101169632,LOC101471088,LOC100695262 coding upstream 68371 2193300 ~ 2200457 (+)
trnat-agu_15 NA coding upstream 147363 2121392 ~ 2121465 (+)
trnat-agu_14 NA coding upstream 150008 2118747 ~ 2118820 (+)
LOC120547899 LOC102301710,LOC107396804,LOC100696318 coding upstream 156957 2006144 ~ 2111871 (+)
trnat-agu_12 NA coding upstream 215827 2052927 ~ 2053001 (+)
rps27a rps27a coding downstream 188365 2504767 ~ 2508381 (+)
LOC120548433 NA coding downstream 212778 2529180 ~ 2637276 (+)
LOC120548306 NA coding downstream 341455 2657857 ~ 2663678 (+)
LOC120548310 NA coding downstream 512657 2829059 ~ 2829748 (+)
znf365 znf365,LOC100708019,LOC101465348,LOC102787219 coding downstream 807365 3123767 ~ 3137751 (+)
G191245 NA non-coding upstream 35438 2144673 ~ 2233390 (+)
G191242 NA non-coding upstream 39722 2210033 ~ 2229106 (+)
G191219 NA non-coding upstream 61411 2145758 ~ 2207417 (+)
G191246 NA non-coding upstream 69175 2199414 ~ 2199653 (+)
G191247 NA non-coding upstream 70975 2179179 ~ 2197853 (+)
G191273 NA non-coding downstream 39442 2355844 ~ 2375789 (+)
G191272 NA non-coding downstream 56476 2372878 ~ 2373339 (+)
G191290 NA non-coding downstream 71188 2387590 ~ 2387864 (+)
G191292 NA non-coding downstream 72192 2388594 ~ 2421229 (+)
G191306 NA non-coding downstream 105477 2421879 ~ 2435635 (+)
G191236 NA other upstream 164131 2047957 ~ 2104697 (+)
G191230 NA other upstream 264600 2002812 ~ 2004228 (+)
G191212 NA other upstream 319594 1948390 ~ 1949234 (+)
G190785 NA other upstream 488846 1701556 ~ 1779982 (+)
G190758 NA other upstream 653282 1581834 ~ 1615546 (+)
G191565 sptbn1 other downstream 439752 2756154 ~ 2761679 (+)
G191567 sptbn1 other downstream 445648 2762050 ~ 2766062 (+)
G191571 NA other downstream 454231 2770633 ~ 3018448 (+)
G191573 sptbn1,LOC107396444 other downstream 458906 2775308 ~ 2778367 (+)
LOC120548437 NA other downstream 777565 3093967 ~ 3110958 (+)

Expression


Co-expression Network