RNA id: TU259648


Basic Information

Item Value
RNA id TU259648
length 656
lncRNA type inter_gene
GC content 0.56
exon number 4
gene id LOC120548303
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2268828 ~ 2316402 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggtttgaGGAGAATGATGTCAGGATCTGGACGGTCCAAAACACCAACGGGCTGAGATTGAGAGACACGCCTACAGATCACCAGTTACACCTCATAAGCCTCCGTCTGGTGAAGACGAGAGCTACAGTGCAGCCAACCTGCGGCGCCTCGCCCGCAGCCTGAGTGGAACGGTCATCGGGTCCCGACCCCAAAACCTCGGCTCCTCCCACAGCTGTGAGCCCTCTGTGTCCCTCAGacactcctcctcttcctcctccctcctccgtCGCCCCAGcaacccctcctccccctcctccactACAGATCCCTCCCTCCATCACCTCCTCCGTCACCTCCCCCCCTTGCAGACACCCCGGCCCCCGACGGAGGGCCTCTCCTCCTGGGGACACTCAGGTAACAAGCTACCCTACacccccacacatcacaccTCCACCTGCCATCTTTGATGCCTTAATTCCacctttttgttgctttaaGGGGAGAAACTGAGGGTGGGtaggacaaaaaaacaaactaatagagtattaggggaccactaaggtctatataaaagagacttcagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259707 lncRNA upstream 10699 2294117 ~ 2301273 (+) True G191276
TU259705 lncRNA upstream 41779 2269630 ~ 2270193 (+) True G191274
TU259644 lncRNA upstream 82866 2210033 ~ 2229106 (+) False G191242
TU259643 lncRNA upstream 82866 2220553 ~ 2229106 (+) True G191242
TU259654 lncRNA upstream 112319 2199414 ~ 2199653 (+) True G191246
TU259686 lncRNA downstream 2048 2318450 ~ 2319985 (+) True G191270
TU259688 lncRNA downstream 2048 2318450 ~ 2319985 (+) False G191270
TU259695 lncRNA downstream 2791 2319193 ~ 2320857 (+) False G191270
TU259704 lncRNA downstream 39442 2355844 ~ 2375789 (+) True G191273
TU259703 lncRNA downstream 56476 2372878 ~ 2373339 (+) True G191272
XM_039784136.1 mRNA upstream 111515 2193300 ~ 2200457 (+) True LOC120548117
XM_039783719.1 mRNA upstream 200101 2006144 ~ 2111871 (+) False LOC120547899
XM_039784446.1 mRNA downstream 188365 2504767 ~ 2508381 (+) True rps27a
XM_039784693.1 mRNA downstream 212778 2529180 ~ 2637276 (+) True LOC120548433
XM_039784452.1 mRNA downstream 341455 2657857 ~ 2663678 (+) True LOC120548306
XM_039784458.1 mRNA downstream 512657 2829059 ~ 2829748 (+) True LOC120548310
XM_039784697.1 mRNA downstream 777565 3093967 ~ 3110958 (+) True LOC120548437
unassigned_transcript_1105 other upstream 190507 2121392 ~ 2121465 (+) True trnat-agu_15
unassigned_transcript_1104 other upstream 193152 2118747 ~ 2118820 (+) True trnat-agu_14
TU259632 other upstream 207275 2047957 ~ 2104697 (+) True G191236
unassigned_transcript_1099 other upstream 258971 2052927 ~ 2053001 (+) True trnat-agu_12
unassigned_transcript_1097 other upstream 266153 2045746 ~ 2045819 (+) True trnat-ugu_6
TU260161 other downstream 439752 2756154 ~ 2761679 (+) True G191565
TU260163 other downstream 445648 2762050 ~ 2766062 (+) True G191567
TU260196 other downstream 458906 2775308 ~ 2778367 (+) True G191573
TU260181 other downstream 506962 2823364 ~ 2921724 (+) False G191571
TU260292 other downstream 777582 3093984 ~ 3095422 (+) False LOC120548437

Expression Profile