RNA id: unassigned_transcript_1097


Basic Information

Item Value
RNA id unassigned_transcript_1097
length 74
RNA type tRNA
GC content 0.50
exon number 1
gene id trnat-ugu_6
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2045746 ~ 2045819 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGCTGTGGCTTAGTTGGTTAAAGCCCCTGTCTTGTAAACAGGAgatcctgggttcaaatcccagcagTACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259628 lncRNA upstream 11690 2021693 ~ 2034056 (+) True G191233
TU259595 lncRNA upstream 45702 1999191 ~ 2000044 (+) True G191214
TU259621 lncRNA upstream 59996 1985439 ~ 1985750 (+) True G191229
TU259618 lncRNA upstream 62151 1972658 ~ 1983595 (+) True G191227
TU259603 lncRNA downstream 44296 2090115 ~ 2153393 (+) True G191218
TU259589 lncRNA downstream 55889 2101708 ~ 2117071 (+) False G191213
TU259582 lncRNA downstream 64659 2110478 ~ 2117071 (+) True G191213
TU259586 lncRNA downstream 64659 2110478 ~ 2117071 (+) False G191213
TU259636 lncRNA downstream 79383 2125202 ~ 2152936 (+) True G191240
XM_039783064.1 mRNA upstream 54932 1972182 ~ 1990814 (+) True LOC120547583
XM_039784692.1 mRNA upstream 120200 1885951 ~ 1925546 (+) True LOC120548430
XM_039784691.1 mRNA upstream 163698 1878418 ~ 1882048 (+) True LOC120548429
XM_039784012.1 mRNA upstream 190039 1849313 ~ 1855707 (+) True LOC120548061
XM_039784686.1 mRNA upstream 293769 1749904 ~ 1751977 (+) True LOC120548423
XM_039784136.1 mRNA downstream 147481 2193300 ~ 2200457 (+) True LOC120548117
XM_039784446.1 mRNA downstream 458948 2504767 ~ 2508381 (+) True rps27a
XM_039784693.1 mRNA downstream 483361 2529180 ~ 2637276 (+) True LOC120548433
XM_039784452.1 mRNA downstream 612038 2657857 ~ 2663678 (+) True LOC120548306
XM_039784458.1 mRNA downstream 783240 2829059 ~ 2829748 (+) True LOC120548310
TU259623 other upstream 41518 2002812 ~ 2004228 (+) True G191230
unassigned_transcript_1096 other upstream 81647 1964026 ~ 1964099 (+) True trnat-agu_10
unassigned_transcript_1093 other upstream 84781 1960892 ~ 1960965 (+) True trnat-cgu_3
TU259572 other upstream 96512 1948390 ~ 1949234 (+) True G191212
TU258856 other upstream 325629 1713155 ~ 1720117 (+) False G190785
TU259632 other downstream 2138 2047957 ~ 2104697 (+) True G191236
unassigned_transcript_1099 other downstream 7108 2052927 ~ 2053001 (+) True trnat-agu_12
unassigned_transcript_1104 other downstream 72928 2118747 ~ 2118820 (+) True trnat-agu_14
unassigned_transcript_1105 other downstream 75573 2121392 ~ 2121465 (+) True trnat-agu_15
TU259649 other downstream 223009 2268828 ~ 2316235 (+) True LOC120548303

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) unassigned_transcript_2772 True 74 tRNA 0.53 1 NW_025048114.1 1422313 ~ 1422386 (+)