RNA id: TU259621


Basic Information

Item Value
RNA id TU259621
length 228
lncRNA type intronic
GC content 0.49
exon number 2
gene id G191229
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 1985439 ~ 1985750 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acagacacacacagacagacagacagacagaaagacacacacacagacagacagacagacagacagacagacagacacacacacagacagacagacagacagacacacacacacacacacacacacacagacagacagacagacagacagacagacacacacacagacagacagacagacagacagacagacagacagacaaagacagacagacagacagacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259618 lncRNA upstream 1844 1972658 ~ 1983595 (+) True G191227
TU259616 lncRNA upstream 1844 1972950 ~ 1983595 (+) False G191227
TU259617 lncRNA upstream 1844 1973872 ~ 1983595 (+) False G191227
TU259605 lncRNA upstream 10239 1956619 ~ 1975200 (+) True G191220
TU259569 lncRNA upstream 53588 1931283 ~ 1931851 (+) True G191209
TU259595 lncRNA downstream 13441 1999191 ~ 2000044 (+) True G191214
TU259628 lncRNA downstream 35943 2021693 ~ 2034056 (+) True G191233
TU259603 lncRNA downstream 104365 2090115 ~ 2153393 (+) True G191218
TU259589 lncRNA downstream 115958 2101708 ~ 2117071 (+) False G191213
TU259582 lncRNA downstream 124728 2110478 ~ 2117071 (+) True G191213
XM_039784692.1 mRNA upstream 59893 1885951 ~ 1925546 (+) True LOC120548430
XM_039784691.1 mRNA upstream 103391 1878418 ~ 1882048 (+) True LOC120548429
XM_039784012.1 mRNA upstream 129732 1849313 ~ 1855707 (+) True LOC120548061
XM_039784686.1 mRNA upstream 233462 1749904 ~ 1751977 (+) True LOC120548423
XM_039784294.1 mRNA upstream 315578 1629477 ~ 1669861 (+) True LOC120548209
XM_039783716.1 mRNA downstream 20394 2006144 ~ 2111871 (+) True LOC120547899
XM_039783717.1 mRNA downstream 20394 2006144 ~ 2111871 (+) False LOC120547899
XM_039783719.1 mRNA downstream 20394 2006144 ~ 2111871 (+) False LOC120547899
XM_039783720.1 mRNA downstream 20394 2006144 ~ 2111871 (+) False LOC120547899
XM_039783718.1 mRNA downstream 20394 2006144 ~ 2111871 (+) False LOC120547899
unassigned_transcript_1096 other upstream 21340 1964026 ~ 1964099 (+) True trnat-agu_10
unassigned_transcript_1093 other upstream 24474 1960892 ~ 1960965 (+) True trnat-cgu_3
TU259572 other upstream 36205 1948390 ~ 1949234 (+) True G191212
TU258856 other upstream 265322 1713155 ~ 1720117 (+) False G190785
TU258826 other upstream 369893 1581834 ~ 1615546 (+) True G190758
TU259623 other downstream 17062 2002812 ~ 2004228 (+) True G191230
unassigned_transcript_1097 other downstream 59996 2045746 ~ 2045819 (+) True trnat-ugu_6
TU259632 other downstream 62207 2047957 ~ 2104697 (+) True G191236
unassigned_transcript_1099 other downstream 67177 2052927 ~ 2053001 (+) True trnat-agu_12
unassigned_transcript_1104 other downstream 132997 2118747 ~ 2118820 (+) True trnat-agu_14

Expression Profile