RNA id: TU259618


Basic Information

Item Value
RNA id TU259618
length 289
lncRNA type sense_over
GC content 0.49
exon number 3
gene id G191227
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 1972658 ~ 1983595 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacagacacacacacacacacaggacgcacacacacacacacacacacacacacacacagcacacacacacagacacacacacacacacacacagagcgagacacacagacacatacacacagagacacacagacacatacacacgcacacacacagagagagagacacagacacacacacacacacacacacacacaacacacacacatacacacacacacacacacacacacacagacacacacacacagatacacacacacacacacacacagatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259569 lncRNA upstream 40807 1931283 ~ 1931851 (+) True G191209
TU259566 lncRNA upstream 50801 1899761 ~ 1921857 (+) True G191206
TU259564 lncRNA upstream 58727 1909632 ~ 1913931 (+) True G191205
XR_005637147.1 lncRNA upstream 155516 1816084 ~ 1817142 (+) True LOC120548173
XR_005637163.1 lncRNA upstream 156898 1814427 ~ 1815760 (+) True LOC120548281
TU259621 lncRNA downstream 1844 1985439 ~ 1985750 (+) True G191229
TU259595 lncRNA downstream 15596 1999191 ~ 2000044 (+) True G191214
TU259628 lncRNA downstream 38098 2021693 ~ 2034056 (+) True G191233
TU259603 lncRNA downstream 106520 2090115 ~ 2153393 (+) True G191218
TU259589 lncRNA downstream 118113 2101708 ~ 2117071 (+) False G191213
XM_039784692.1 mRNA upstream 47112 1885951 ~ 1925546 (+) True LOC120548430
XM_039784691.1 mRNA upstream 90610 1878418 ~ 1882048 (+) True LOC120548429
XM_039784012.1 mRNA upstream 116951 1849313 ~ 1855707 (+) True LOC120548061
XM_039784686.1 mRNA upstream 220681 1749904 ~ 1751977 (+) True LOC120548423
XM_039784294.1 mRNA upstream 302797 1629477 ~ 1669861 (+) True LOC120548209
XM_039783716.1 mRNA downstream 22549 2006144 ~ 2111871 (+) True LOC120547899
XM_039783717.1 mRNA downstream 22549 2006144 ~ 2111871 (+) False LOC120547899
XM_039783719.1 mRNA downstream 22549 2006144 ~ 2111871 (+) False LOC120547899
XM_039783720.1 mRNA downstream 22549 2006144 ~ 2111871 (+) False LOC120547899
XM_039783718.1 mRNA downstream 22549 2006144 ~ 2111871 (+) False LOC120547899
unassigned_transcript_1096 other upstream 8559 1964026 ~ 1964099 (+) True trnat-agu_10
unassigned_transcript_1093 other upstream 11693 1960892 ~ 1960965 (+) True trnat-cgu_3
TU259572 other upstream 23424 1948390 ~ 1949234 (+) True G191212
TU258856 other upstream 252541 1713155 ~ 1720117 (+) False G190785
TU258826 other upstream 357112 1581834 ~ 1615546 (+) True G190758
TU259623 other downstream 19217 2002812 ~ 2004228 (+) True G191230
unassigned_transcript_1097 other downstream 62151 2045746 ~ 2045819 (+) True trnat-ugu_6
TU259632 other downstream 64362 2047957 ~ 2104697 (+) True G191236
unassigned_transcript_1099 other downstream 69332 2052927 ~ 2053001 (+) True trnat-agu_12
unassigned_transcript_1104 other downstream 135152 2118747 ~ 2118820 (+) True trnat-agu_14

Expression Profile