RNA id: unassigned_transcript_1093


Basic Information

Item Value
RNA id unassigned_transcript_1093
length 74
RNA type tRNA
GC content 0.54
exon number 1
gene id trnat-cgu_3
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 1960892 ~ 1960965 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGCTGTGGCTTAGTTGGTTAAAGTGCCTGTCTCGTAAACAGGAGAtcctgggttcgaatcccagcCGTGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259569 lncRNA upstream 29041 1931283 ~ 1931851 (+) True G191209
TU259566 lncRNA upstream 39035 1899761 ~ 1921857 (+) True G191206
TU259564 lncRNA upstream 46961 1909632 ~ 1913931 (+) True G191205
XR_005637147.1 lncRNA upstream 143750 1816084 ~ 1817142 (+) True LOC120548173
XR_005637163.1 lncRNA upstream 145132 1814427 ~ 1815760 (+) True LOC120548281
TU259618 lncRNA downstream 11693 1972658 ~ 1983595 (+) True G191227
TU259616 lncRNA downstream 11985 1972950 ~ 1983595 (+) False G191227
TU259617 lncRNA downstream 12907 1973872 ~ 1983595 (+) False G191227
TU259621 lncRNA downstream 24474 1985439 ~ 1985750 (+) True G191229
TU259595 lncRNA downstream 38226 1999191 ~ 2000044 (+) True G191214
XM_039784692.1 mRNA upstream 35346 1885951 ~ 1925546 (+) True LOC120548430
XM_039784691.1 mRNA upstream 78844 1878418 ~ 1882048 (+) True LOC120548429
XM_039784012.1 mRNA upstream 105185 1849313 ~ 1855707 (+) True LOC120548061
XM_039784686.1 mRNA upstream 208915 1749904 ~ 1751977 (+) True LOC120548423
XM_039784294.1 mRNA upstream 291031 1629477 ~ 1669861 (+) True LOC120548209
XM_039783064.1 mRNA downstream 11217 1972182 ~ 1990814 (+) True LOC120547583
XM_039783716.1 mRNA downstream 45179 2006144 ~ 2111871 (+) True LOC120547899
XM_039783717.1 mRNA downstream 45179 2006144 ~ 2111871 (+) False LOC120547899
XM_039783719.1 mRNA downstream 45179 2006144 ~ 2111871 (+) False LOC120547899
XM_039783720.1 mRNA downstream 45179 2006144 ~ 2111871 (+) False LOC120547899
TU259572 other upstream 11658 1948390 ~ 1949234 (+) True G191212
TU258856 other upstream 240775 1713155 ~ 1720117 (+) False G190785
TU258826 other upstream 345346 1581834 ~ 1615546 (+) True G190758
TU258825 other upstream 417600 1542856 ~ 1543292 (+) True G190757
TU258792 other upstream 421054 1535297 ~ 1539838 (+) False G190735
unassigned_transcript_1096 other downstream 3061 1964026 ~ 1964099 (+) True trnat-agu_10
TU259623 other downstream 41847 2002812 ~ 2004228 (+) True G191230
unassigned_transcript_1097 other downstream 84781 2045746 ~ 2045819 (+) True trnat-ugu_6
TU259632 other downstream 86992 2047957 ~ 2104697 (+) True G191236
unassigned_transcript_1099 other downstream 91962 2052927 ~ 2053001 (+) True trnat-agu_12