RNA id: XM_039783064.1


Basic Information

Item Value
RNA id XM_039783064.1
length 1660
RNA type mRNA
GC content 0.58
exon number 9
gene id LOC120547583
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 1972182 ~ 1990814 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttgcaggagTCGCAGCCTGCGGACTCCGGCCAACATGTTCATCATTAACTTGGCGATCACAGACCTGCTGATGTGTGTCACCCAGACGCCCATCTTCTTCATCACAAGCATGCACAAACGCTGGATCTTTGGAgagaaaggctGCGAGGTGTATGCGTTCTGTGGCGCTCTCTTCGGGATGTGCTCCATGGTCACGCTAACGGTGATCGCCCTCGACCGTTACTTCGTCATCACGCGACCTCTGACCTCCATCGGCGTCCTGTCCCGTAAACGGGCCCTCTGGATCCTGCTGGGGGCCTGGCTCTACACCCTGTTCTGGAGCCTGCCGCCCTTCTTCGGCTGGAgtgCCTATGTCCCCGAGGGCCTGATGACCTCGTGTACGTGGGACTACATGACGTTCACCCCATCGGTGCGAGCCTACACCATGCTGCTCTTCGTCTGCGTCTTCTTCGTACCGCTCTTCATCATCATGTACTGCTACTACTGCATCTTCAGAGCCATCCGCAGCACCAACagggctGTGGGGAAGACTAACGGCAGCATCCACAGtcacagcagctgcagaaaCTCGGCGAAGAACTTCCAGCGGCTGCAGAACGAGTGGAAGATGGCGAAGGTCGCTCTGATCGTCATCCTGCTCTACGTTATCTCCTGGTCGCCATACTCCGCGGTCGCTCTCACCGCCTTCGCCGGGTACGCAGACATCTTGACTCCCTACATGAACTCTGTGCCTGCCGTCATCGCCAAGGCCTCGGCCATCCACAACCCCATCATCTACGCCATCACACACCCAAaatacagGATAGCGTTGGCCAAGTACATCCCGTGTCTCGGCAGGCTGCTCTGCGTCCACGCTCGCGACCTGCGCTCGGCCAGCAGCAGCTTCGTGTCGACGCGGCGCTCCACCGTGACCAGCCAGACCTCGGACATCAGCAGCCAGCTGAGGCAGCAGAGCCACAAGACCCGCCTCTCCTCCGTCTCCGACAGCGAATCGGGTATGACGGACACCGAGGCGGACCTGTCCAGCGTGGGCTCCAGACCGGCCAGCCGCCAGGTGTCATGTGACCTCAGCAGAGACACCACCGAGCTGCCCGAGTTCAAGCCCAGCGCCAGCTTCAAGTCCACGATGAAGAGCCACGACTCGGGCATCTTCGAAAAGACGTCCAATGACACTGATGTCTCCGCGCCGGTAGCCAGTGAACGCGGCAGCATCCCAGATACAAAAATGGCAGAGGCCCACGGGAGGAGAAGCACGATTGGTCGAGTCCCGAGCATCGTCGTCACGTCTGAGTCCAGTCCCTTCCTTCCCATTGGACGAAAGGGTTCCACTGCCCGCCCGACGACAGCCAATAACAGCAGCGCGGGGGCGGGGTCTGGGTAGAGAAGCCTGCAGAAGCTCTTCACCTGAAGCTCAGAAatcacacattctcactcccattgcgCCAGAAAGAGACCCTTCtctggcgtttgttattgacgcattAAAATCTCCTTTTGGCGCCACATTTAGACGCTCacggtgtggtatggcgcgtggcggcctgaactagggttgggtaccgaaacccagCTCCACTACGAAACCGTTTCCTATGCAACctgtaggaatcggaccggattacaaagcaaatttcggttccacttaaaggtgctctaagc

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04255 OPN4, Rh2_7; r-opsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259569 lncRNA upstream 40331 1931283 ~ 1931851 (+) True G191209
TU259566 lncRNA upstream 50325 1899761 ~ 1921857 (+) True G191206
TU259564 lncRNA upstream 58251 1909632 ~ 1913931 (+) True G191205
XR_005637147.1 lncRNA upstream 155040 1816084 ~ 1817142 (+) True LOC120548173
XR_005637163.1 lncRNA upstream 156422 1814427 ~ 1815760 (+) True LOC120548281
TU259595 lncRNA downstream 8377 1999191 ~ 2000044 (+) True G191214
TU259628 lncRNA downstream 30879 2021693 ~ 2034056 (+) True G191233
TU259603 lncRNA downstream 99301 2090115 ~ 2153393 (+) True G191218
TU259589 lncRNA downstream 110894 2101708 ~ 2117071 (+) False G191213
TU259582 lncRNA downstream 119664 2110478 ~ 2117071 (+) True G191213
XM_039784692.1 mRNA upstream 46636 1885951 ~ 1925546 (+) True LOC120548430
XM_039784691.1 mRNA upstream 90134 1878418 ~ 1882048 (+) True LOC120548429
XM_039784012.1 mRNA upstream 116475 1849313 ~ 1855707 (+) True LOC120548061
XM_039784686.1 mRNA upstream 220205 1749904 ~ 1751977 (+) True LOC120548423
XM_039784294.1 mRNA upstream 302321 1629477 ~ 1669861 (+) True LOC120548209
XM_039783716.1 mRNA downstream 15330 2006144 ~ 2111871 (+) True LOC120547899
XM_039783717.1 mRNA downstream 15330 2006144 ~ 2111871 (+) False LOC120547899
XM_039783719.1 mRNA downstream 15330 2006144 ~ 2111871 (+) False LOC120547899
XM_039783720.1 mRNA downstream 15330 2006144 ~ 2111871 (+) False LOC120547899
XM_039783718.1 mRNA downstream 15330 2006144 ~ 2111871 (+) False LOC120547899
unassigned_transcript_1096 other upstream 8083 1964026 ~ 1964099 (+) True trnat-agu_10
unassigned_transcript_1093 other upstream 11217 1960892 ~ 1960965 (+) True trnat-cgu_3
TU259572 other upstream 22948 1948390 ~ 1949234 (+) True G191212
TU258856 other upstream 252065 1713155 ~ 1720117 (+) False G190785
TU258826 other upstream 356636 1581834 ~ 1615546 (+) True G190758
TU259623 other downstream 11998 2002812 ~ 2004228 (+) True G191230
unassigned_transcript_1097 other downstream 54932 2045746 ~ 2045819 (+) True trnat-ugu_6
TU259632 other downstream 57143 2047957 ~ 2104697 (+) True G191236
unassigned_transcript_1099 other downstream 62113 2052927 ~ 2053001 (+) True trnat-agu_12
unassigned_transcript_1104 other downstream 127933 2118747 ~ 2118820 (+) True trnat-agu_14

Expression Profile