RNA id: TU259564


Basic Information

Item Value
RNA id TU259564
length 408
lncRNA type intronic
GC content 0.50
exon number 3
gene id G191205
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 1909632 ~ 1913931 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaacatcctcccattttagaaagtgtaaagaaTCCAAatgacacacatgcacgcacgcatgcacacactcacgcacgcacgcacacacacagagacacacacagagacacacacacacacacacacacacagacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacagacacacacagacagacacagacacacacacacacacacacacagacacacacagacacacacaaccccacacactcaaactcacacacagacacagacccacacaaGCCCACAcactcaaatacacacacagacacagacccaaacaagcccacacactcaaacacacacacacacacacacacaggcacaggcacacagacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637147.1 lncRNA upstream 92490 1816084 ~ 1817142 (+) True LOC120548173
XR_005637163.1 lncRNA upstream 93872 1814427 ~ 1815760 (+) True LOC120548281
TU258870 lncRNA upstream 116060 1785481 ~ 1793572 (+) True G190786
TU258865 lncRNA upstream 129650 1719943 ~ 1779982 (+) False G190785
TU259569 lncRNA downstream 17352 1931283 ~ 1931851 (+) True G191209
TU259605 lncRNA downstream 42688 1956619 ~ 1975200 (+) True G191220
TU259618 lncRNA downstream 58727 1972658 ~ 1983595 (+) True G191227
TU259616 lncRNA downstream 59019 1972950 ~ 1983595 (+) False G191227
TU259617 lncRNA downstream 59941 1973872 ~ 1983595 (+) False G191227
XM_039784691.1 mRNA upstream 27584 1878418 ~ 1882048 (+) True LOC120548429
XM_039784012.1 mRNA upstream 53925 1849313 ~ 1855707 (+) True LOC120548061
XM_039784686.1 mRNA upstream 157655 1749904 ~ 1751977 (+) True LOC120548423
XM_039784294.1 mRNA upstream 239771 1629477 ~ 1669861 (+) True LOC120548209
XM_039783195.1 mRNA upstream 410405 1491985 ~ 1499227 (+) True LOC120547663
XM_039783064.1 mRNA downstream 58251 1972182 ~ 1990814 (+) True LOC120547583
XM_039783716.1 mRNA downstream 92213 2006144 ~ 2111871 (+) True LOC120547899
XM_039783717.1 mRNA downstream 92213 2006144 ~ 2111871 (+) False LOC120547899
XM_039783719.1 mRNA downstream 92213 2006144 ~ 2111871 (+) False LOC120547899
XM_039783720.1 mRNA downstream 92213 2006144 ~ 2111871 (+) False LOC120547899
TU258856 other upstream 189515 1713155 ~ 1720117 (+) False G190785
TU258826 other upstream 294086 1581834 ~ 1615546 (+) True G190758
TU258825 other upstream 366340 1542856 ~ 1543292 (+) True G190757
TU258792 other upstream 369794 1535297 ~ 1539838 (+) False G190735
TU258797 other upstream 410520 1492006 ~ 1499112 (+) False LOC120547663
TU259572 other downstream 34459 1948390 ~ 1949234 (+) True G191212
unassigned_transcript_1093 other downstream 46961 1960892 ~ 1960965 (+) True trnat-cgu_3
unassigned_transcript_1096 other downstream 50095 1964026 ~ 1964099 (+) True trnat-agu_10
TU259623 other downstream 88881 2002812 ~ 2004228 (+) True G191230
unassigned_transcript_1097 other downstream 131815 2045746 ~ 2045819 (+) True trnat-ugu_6

Expression Profile