RNA id: TU259572


Basic Information

Item Value
RNA id TU259572
length 718
RNA type TUCP
GC content 0.51
exon number 2
gene id G191212
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 1948390 ~ 1949234 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcgtgctggtcttacagagaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcatgtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagagaggtgtgttcaggtgcattctggggggCGCGTGctgtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggagtattgctatcttgaggcagcgggaagtgatggcgccattgaccaacaaaaacctggtctaaagtcaataacgcagcatttcattgttattttaacagagcattagtaaaatgctcctaggctcgtgacgcagcacacacacacacacacacacacacacacacacacacacacatgcagaagattactaataaaaatattacggtgcaaatcctccatcataacagcaatgctccaaggtccaaacgcgcctggcttttaaagggaatgggagatgatctctgattggttgattgcatgttacgcccaaaacacacctctgattaatgaagacactaaggacaaccctttagaaccaggcgcccggcacacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259569 lncRNA upstream 16539 1931283 ~ 1931851 (+) True G191209
TU259566 lncRNA upstream 26533 1899761 ~ 1921857 (+) True G191206
TU259564 lncRNA upstream 34459 1909632 ~ 1913931 (+) True G191205
XR_005637147.1 lncRNA upstream 131248 1816084 ~ 1817142 (+) True LOC120548173
XR_005637163.1 lncRNA upstream 132630 1814427 ~ 1815760 (+) True LOC120548281
TU259605 lncRNA downstream 7385 1956619 ~ 1975200 (+) True G191220
TU259618 lncRNA downstream 23424 1972658 ~ 1983595 (+) True G191227
TU259616 lncRNA downstream 23716 1972950 ~ 1983595 (+) False G191227
TU259617 lncRNA downstream 24638 1973872 ~ 1983595 (+) False G191227
TU259621 lncRNA downstream 36205 1985439 ~ 1985750 (+) True G191229
XM_039784692.1 mRNA upstream 22844 1885951 ~ 1925546 (+) True LOC120548430
XM_039784691.1 mRNA upstream 66342 1878418 ~ 1882048 (+) True LOC120548429
XM_039784012.1 mRNA upstream 92683 1849313 ~ 1855707 (+) True LOC120548061
XM_039784686.1 mRNA upstream 196413 1749904 ~ 1751977 (+) True LOC120548423
XM_039784294.1 mRNA upstream 278529 1629477 ~ 1669861 (+) True LOC120548209
XM_039783064.1 mRNA downstream 22948 1972182 ~ 1990814 (+) True LOC120547583
XM_039783716.1 mRNA downstream 56910 2006144 ~ 2111871 (+) True LOC120547899
XM_039783717.1 mRNA downstream 56910 2006144 ~ 2111871 (+) False LOC120547899
XM_039783719.1 mRNA downstream 56910 2006144 ~ 2111871 (+) False LOC120547899
XM_039783720.1 mRNA downstream 56910 2006144 ~ 2111871 (+) False LOC120547899
TU258856 other upstream 228273 1713155 ~ 1720117 (+) False G190785
TU258826 other upstream 332844 1581834 ~ 1615546 (+) True G190758
TU258719 other upstream 381269 1403523 ~ 1567121 (+) True G190675
unassigned_transcript_1093 other downstream 11658 1960892 ~ 1960965 (+) True trnat-cgu_3
unassigned_transcript_1096 other downstream 14792 1964026 ~ 1964099 (+) True trnat-agu_10
TU259623 other downstream 53578 2002812 ~ 2004228 (+) True G191230
unassigned_transcript_1097 other downstream 96512 2045746 ~ 2045819 (+) True trnat-ugu_6
TU259632 other downstream 98723 2047957 ~ 2104697 (+) True G191236

Expression Profile