RNA id: TU258719


Basic Information

Item Value
RNA id TU258719
length 550
RNA type TUCP
GC content 0.49
exon number 4
gene id G190675
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 1403523 ~ 1567121 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgtgtctgtgtgtgtgtttctgtgtgtgcggtgtgtgtgtgtgtctgtgtgtgtctgtctgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtctgtgtgtgtgtgtctctgtgtctgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtctctgtgtttgcgtgtgtgtgtgtctgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtctgtgtctctgtgtgtgtgtctgtgtgtgtgtgtgtctctgtgtgtgcgtgtgtctctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtctctgtgtgtctgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtctctgtgtgtctgtatgtgtgtctgtgtgtgtgtctgtatgtatgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258748 lncRNA upstream 15838 1298106 ~ 1387685 (+) True G190701
TU258713 lncRNA upstream 16876 1377488 ~ 1386647 (+) True G190669
TU258779 lncRNA upstream 28156 1374929 ~ 1375367 (+) True G190726
TU258718 lncRNA upstream 36119 1322589 ~ 1367404 (+) True G190674
TU258771 lncRNA upstream 43266 1359413 ~ 1360257 (+) False G190720
TU258834 lncRNA downstream 115370 1682491 ~ 1690886 (+) True G190765
TU258854 lncRNA downstream 128617 1695738 ~ 1698673 (+) True G190784
TU258864 lncRNA downstream 134435 1701556 ~ 1779982 (+) False G190785
TU258867 lncRNA downstream 136980 1704101 ~ 1714843 (+) True G190785
TU258859 lncRNA downstream 146034 1713155 ~ 1748166 (+) False G190785
XM_039783917.1 mRNA upstream 51192 1349395 ~ 1352331 (+) True LOC120548015
XM_039784322.1 mRNA upstream 68579 1333473 ~ 1334944 (+) True LOC120548224
XM_039784681.1 mRNA upstream 123938 1268100 ~ 1279585 (+) True LOC120548417
XM_039784680.1 mRNA upstream 132994 1261525 ~ 1270529 (+) False LOC120548416
XM_039784677.1 mRNA upstream 175314 1227292 ~ 1228209 (+) True LOC120548414
XM_039784294.1 mRNA downstream 62356 1629477 ~ 1669861 (+) True LOC120548209
XM_039784686.1 mRNA downstream 182783 1749904 ~ 1751977 (+) True LOC120548423
XM_039784012.1 mRNA downstream 282192 1849313 ~ 1855707 (+) True LOC120548061
XM_039784691.1 mRNA downstream 311297 1878418 ~ 1882048 (+) True LOC120548429
XM_039784692.1 mRNA downstream 318830 1885951 ~ 1925546 (+) True LOC120548430
TU258760 other upstream 50925 1349438 ~ 1352598 (+) False G190713
TU258747 other upstream 116696 1286410 ~ 1286827 (+) True G190700
TU258691 other upstream 131617 1144425 ~ 1271906 (+) False LOC120548410
TU258701 other upstream 133110 1268136 ~ 1270413 (+) True G190658
TU258551 other upstream 137440 1262816 ~ 1266083 (+) True LOC120548416
TU258826 other downstream 14713 1581834 ~ 1615546 (+) True G190758
TU258856 other downstream 146034 1713155 ~ 1720117 (+) False G190785
TU259572 other downstream 381269 1948390 ~ 1949234 (+) True G191212
unassigned_transcript_1093 other downstream 393771 1960892 ~ 1960965 (+) True trnat-cgu_3
unassigned_transcript_1096 other downstream 396905 1964026 ~ 1964099 (+) True trnat-agu_10

Expression Profile